miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23217 5' -51.8 NC_005259.1 + 49183 0.66 0.899518
Target:  5'- cGCC-CCGAUCCGaaagGACCgggGCgguuuccgUUGUGCg -3'
miRNA:   3'- -CGGcGGCUGGGU----UUGGaa-CG--------AAUACG- -5'
23217 5' -51.8 NC_005259.1 + 35566 0.66 0.899518
Target:  5'- uGCCGCCGACcgCCGAGaucCCguuguaGCUgaggucggGUGCg -3'
miRNA:   3'- -CGGCGGCUG--GGUUU---GGaa----CGAa-------UACG- -5'
23217 5' -51.8 NC_005259.1 + 60153 0.67 0.892407
Target:  5'- gGCCGCCGcCUCAGcgGCCUcacggGCg---GCg -3'
miRNA:   3'- -CGGCGGCuGGGUU--UGGAa----CGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 36782 0.67 0.892407
Target:  5'- uGCCGCCG-UCCuGACCgcucGCgUcgGCa -3'
miRNA:   3'- -CGGCGGCuGGGuUUGGaa--CGaAuaCG- -5'
23217 5' -51.8 NC_005259.1 + 35884 0.67 0.892407
Target:  5'- cGCCGCCGAggCAGACCacgGCgagccauucUGCg -3'
miRNA:   3'- -CGGCGGCUggGUUUGGaa-CGaau------ACG- -5'
23217 5' -51.8 NC_005259.1 + 43889 0.67 0.885026
Target:  5'- uGCCGCCGacauuGCCCGcGCCg-GCUgaucgAUGg -3'
miRNA:   3'- -CGGCGGC-----UGGGUuUGGaaCGAa----UACg -5'
23217 5' -51.8 NC_005259.1 + 9248 0.67 0.882
Target:  5'- gGCCGCaguaGcGCCCGAACCggucccgaaacgGCgaguUAUGCg -3'
miRNA:   3'- -CGGCGg---C-UGGGUUUGGaa----------CGa---AUACG- -5'
23217 5' -51.8 NC_005259.1 + 3911 0.67 0.877382
Target:  5'- uGCUGCCGuACCUGAACCccgGCgagaccGUGUc -3'
miRNA:   3'- -CGGCGGC-UGGGUUUGGaa-CGaa----UACG- -5'
23217 5' -51.8 NC_005259.1 + 46788 0.67 0.877382
Target:  5'- cGCCggGCCGAacaCCGAGCCU-GCgagcGCa -3'
miRNA:   3'- -CGG--CGGCUg--GGUUUGGAaCGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 6270 0.67 0.877382
Target:  5'- cGCCGCCGcGCCU--ACCUcGUggucgagugGUGCg -3'
miRNA:   3'- -CGGCGGC-UGGGuuUGGAaCGaa-------UACG- -5'
23217 5' -51.8 NC_005259.1 + 13098 0.67 0.877382
Target:  5'- uGCCaCCGACCCcGGCCc-GCUcg-GCg -3'
miRNA:   3'- -CGGcGGCUGGGuUUGGaaCGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 6499 0.67 0.869479
Target:  5'- aCUGCUGGCCCAcaucGACCgacGCc-GUGCg -3'
miRNA:   3'- cGGCGGCUGGGU----UUGGaa-CGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 44470 0.67 0.861325
Target:  5'- uGCCGCCG-CCCuGGCCggGCcaguugGUGa -3'
miRNA:   3'- -CGGCGGCuGGGuUUGGaaCGaa----UACg -5'
23217 5' -51.8 NC_005259.1 + 19534 0.68 0.852927
Target:  5'- aCCGCCGugC-AGGCCgacGCgUAUGCc -3'
miRNA:   3'- cGGCGGCugGgUUUGGaa-CGaAUACG- -5'
23217 5' -51.8 NC_005259.1 + 5355 0.68 0.852927
Target:  5'- cGCaugaGCCGACCUAucgcGCCggGCaaGUGCc -3'
miRNA:   3'- -CGg---CGGCUGGGUu---UGGaaCGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 45959 0.68 0.852927
Target:  5'- cGuuGCCGACguugCCGAGCUUgGCgagUGUGUc -3'
miRNA:   3'- -CggCGGCUG----GGUUUGGAaCGa--AUACG- -5'
23217 5' -51.8 NC_005259.1 + 45626 0.68 0.852927
Target:  5'- cCCGCCGGgCCGGGCagcGCgccgGUGCc -3'
miRNA:   3'- cGGCGGCUgGGUUUGgaaCGaa--UACG- -5'
23217 5' -51.8 NC_005259.1 + 61715 0.68 0.852927
Target:  5'- gGUCG-CGAUCCAcACCUUGUcgagcaggUGUGCg -3'
miRNA:   3'- -CGGCgGCUGGGUuUGGAACGa-------AUACG- -5'
23217 5' -51.8 NC_005259.1 + 58590 0.68 0.844294
Target:  5'- gGCUGCCGGgCCGGAUCUUuucgagcgccugGCUgAUGUc -3'
miRNA:   3'- -CGGCGGCUgGGUUUGGAA------------CGAaUACG- -5'
23217 5' -51.8 NC_005259.1 + 17671 0.68 0.844294
Target:  5'- cGCCGUCGACUCGccCCgagggUGCcUAUGa -3'
miRNA:   3'- -CGGCGGCUGGGUuuGGa----ACGaAUACg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.