Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 49183 | 0.66 | 0.899518 |
Target: 5'- cGCC-CCGAUCCGaaagGACCgggGCgguuuccgUUGUGCg -3' miRNA: 3'- -CGGcGGCUGGGU----UUGGaa-CG--------AAUACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 35566 | 0.66 | 0.899518 |
Target: 5'- uGCCGCCGACcgCCGAGaucCCguuguaGCUgaggucggGUGCg -3' miRNA: 3'- -CGGCGGCUG--GGUUU---GGaa----CGAa-------UACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 60153 | 0.67 | 0.892407 |
Target: 5'- gGCCGCCGcCUCAGcgGCCUcacggGCg---GCg -3' miRNA: 3'- -CGGCGGCuGGGUU--UGGAa----CGaauaCG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 36782 | 0.67 | 0.892407 |
Target: 5'- uGCCGCCG-UCCuGACCgcucGCgUcgGCa -3' miRNA: 3'- -CGGCGGCuGGGuUUGGaa--CGaAuaCG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 35884 | 0.67 | 0.892407 |
Target: 5'- cGCCGCCGAggCAGACCacgGCgagccauucUGCg -3' miRNA: 3'- -CGGCGGCUggGUUUGGaa-CGaau------ACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 43889 | 0.67 | 0.885026 |
Target: 5'- uGCCGCCGacauuGCCCGcGCCg-GCUgaucgAUGg -3' miRNA: 3'- -CGGCGGC-----UGGGUuUGGaaCGAa----UACg -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 9248 | 0.67 | 0.882 |
Target: 5'- gGCCGCaguaGcGCCCGAACCggucccgaaacgGCgaguUAUGCg -3' miRNA: 3'- -CGGCGg---C-UGGGUUUGGaa----------CGa---AUACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 3911 | 0.67 | 0.877382 |
Target: 5'- uGCUGCCGuACCUGAACCccgGCgagaccGUGUc -3' miRNA: 3'- -CGGCGGC-UGGGUUUGGaa-CGaa----UACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 46788 | 0.67 | 0.877382 |
Target: 5'- cGCCggGCCGAacaCCGAGCCU-GCgagcGCa -3' miRNA: 3'- -CGG--CGGCUg--GGUUUGGAaCGaauaCG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 6270 | 0.67 | 0.877382 |
Target: 5'- cGCCGCCGcGCCU--ACCUcGUggucgagugGUGCg -3' miRNA: 3'- -CGGCGGC-UGGGuuUGGAaCGaa-------UACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 13098 | 0.67 | 0.877382 |
Target: 5'- uGCCaCCGACCCcGGCCc-GCUcg-GCg -3' miRNA: 3'- -CGGcGGCUGGGuUUGGaaCGAauaCG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 6499 | 0.67 | 0.869479 |
Target: 5'- aCUGCUGGCCCAcaucGACCgacGCc-GUGCg -3' miRNA: 3'- cGGCGGCUGGGU----UUGGaa-CGaaUACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 44470 | 0.67 | 0.861325 |
Target: 5'- uGCCGCCG-CCCuGGCCggGCcaguugGUGa -3' miRNA: 3'- -CGGCGGCuGGGuUUGGaaCGaa----UACg -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 19534 | 0.68 | 0.852927 |
Target: 5'- aCCGCCGugC-AGGCCgacGCgUAUGCc -3' miRNA: 3'- cGGCGGCugGgUUUGGaa-CGaAUACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 5355 | 0.68 | 0.852927 |
Target: 5'- cGCaugaGCCGACCUAucgcGCCggGCaaGUGCc -3' miRNA: 3'- -CGg---CGGCUGGGUu---UGGaaCGaaUACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 45959 | 0.68 | 0.852927 |
Target: 5'- cGuuGCCGACguugCCGAGCUUgGCgagUGUGUc -3' miRNA: 3'- -CggCGGCUG----GGUUUGGAaCGa--AUACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 45626 | 0.68 | 0.852927 |
Target: 5'- cCCGCCGGgCCGGGCagcGCgccgGUGCc -3' miRNA: 3'- cGGCGGCUgGGUUUGgaaCGaa--UACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 61715 | 0.68 | 0.852927 |
Target: 5'- gGUCG-CGAUCCAcACCUUGUcgagcaggUGUGCg -3' miRNA: 3'- -CGGCgGCUGGGUuUGGAACGa-------AUACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 58590 | 0.68 | 0.844294 |
Target: 5'- gGCUGCCGGgCCGGAUCUUuucgagcgccugGCUgAUGUc -3' miRNA: 3'- -CGGCGGCUgGGUUUGGAA------------CGAaUACG- -5' |
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23217 | 5' | -51.8 | NC_005259.1 | + | 17671 | 0.68 | 0.844294 |
Target: 5'- cGCCGUCGACUCGccCCgagggUGCcUAUGa -3' miRNA: 3'- -CGGCGGCUGGGUuuGGa----ACGaAUACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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