miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23218 5' -55.8 NC_005259.1 + 28079 0.66 0.707843
Target:  5'- aCACGGUggggugCACCUCGaagugcagauguGGGCCGg -3'
miRNA:   3'- cGUGCCGauaaa-GUGGAGC------------CCCGGUa -5'
23218 5' -55.8 NC_005259.1 + 15552 0.66 0.729015
Target:  5'- gGC-CGGUgccacccUCAgguggccacCCUCGGGGCCAg -3'
miRNA:   3'- -CGuGCCGauaa---AGU---------GGAGCCCCGGUa -5'
23218 5' -55.8 NC_005259.1 + 13135 0.66 0.729015
Target:  5'- cGCACGGUg--UUCGgCUCGaucauGGCCAc -3'
miRNA:   3'- -CGUGCCGauaAAGUgGAGCc----CCGGUa -5'
23218 5' -55.8 NC_005259.1 + 28361 0.66 0.739463
Target:  5'- gGUGCuGGCUGcccCACCUCG-GGCCGa -3'
miRNA:   3'- -CGUG-CCGAUaaaGUGGAGCcCCGGUa -5'
23218 5' -55.8 NC_005259.1 + 15142 0.67 0.63201
Target:  5'- uGUACGGggc---CACCUCGGuGGCCGa -3'
miRNA:   3'- -CGUGCCgauaaaGUGGAGCC-CCGGUa -5'
23218 5' -55.8 NC_005259.1 + 32878 0.67 0.653827
Target:  5'- cGCGCGGUgaucgaUUCACCg-GGGGCgAg -3'
miRNA:   3'- -CGUGCCGaua---AAGUGGagCCCCGgUa -5'
23218 5' -55.8 NC_005259.1 + 50628 0.67 0.653827
Target:  5'- aGCACaGCgguccaugcgAUUaCGCCgcccUCGGGGCCAUa -3'
miRNA:   3'- -CGUGcCGa---------UAAaGUGG----AGCCCCGGUA- -5'
23218 5' -55.8 NC_005259.1 + 57020 0.67 0.664711
Target:  5'- aGCGCGGCUcgg-CGCggUGGGGUCGc -3'
miRNA:   3'- -CGUGCCGAuaaaGUGgaGCCCCGGUa -5'
23218 5' -55.8 NC_005259.1 + 31932 0.67 0.686379
Target:  5'- cGCACucggggucgaGGCgg--UUACCUCGGGuGCCu- -3'
miRNA:   3'- -CGUG----------CCGauaaAGUGGAGCCC-CGGua -5'
23218 5' -55.8 NC_005259.1 + 64766 0.68 0.577628
Target:  5'- cGCgACGGUg----CGCCUCGGcGGCCc- -3'
miRNA:   3'- -CG-UGCCGauaaaGUGGAGCC-CCGGua -5'
23218 5' -55.8 NC_005259.1 + 34008 0.68 0.610192
Target:  5'- uGCAacCGGCUGUaUCcgGCCUCGGcGGCg-- -3'
miRNA:   3'- -CGU--GCCGAUAaAG--UGGAGCC-CCGgua -5'
23218 5' -55.8 NC_005259.1 + 18702 0.7 0.463059
Target:  5'- aGCACGGCgGUcUgACCUCGaucaucGGGCCGc -3'
miRNA:   3'- -CGUGCCGaUAaAgUGGAGC------CCCGGUa -5'
23218 5' -55.8 NC_005259.1 + 68205 0.7 0.473021
Target:  5'- aGCAUGGCgugcUUCugCUCGGuGGaCCAc -3'
miRNA:   3'- -CGUGCCGaua-AAGugGAGCC-CC-GGUa -5'
23218 5' -55.8 NC_005259.1 + 16796 0.71 0.414992
Target:  5'- aCGCGGUcgcgUAcaUCGCgCUCGGGGCCGg -3'
miRNA:   3'- cGUGCCG----AUaaAGUG-GAGCCCCGGUa -5'
23218 5' -55.8 NC_005259.1 + 54315 1.07 0.001461
Target:  5'- uGCACGGCUAUUUCACCUCGGGGCCAUc -3'
miRNA:   3'- -CGUGCCGAUAAAGUGGAGCCCCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.