miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23219 5' -60.1 NC_005259.1 + 20976 0.66 0.547464
Target:  5'- cGCCGGGGUGacaaCUGCGUgugggccuacucgGGCgGCGAc -3'
miRNA:   3'- cUGGCCCCGCcaa-GACGCA-------------UCG-CGCU- -5'
23219 5' -60.1 NC_005259.1 + 27387 0.66 0.538277
Target:  5'- uGACCGGcGGCGGUgUCgGC--AGCgGCGGc -3'
miRNA:   3'- -CUGGCC-CCGCCA-AGaCGcaUCG-CGCU- -5'
23219 5' -60.1 NC_005259.1 + 7207 0.66 0.517058
Target:  5'- cACCGGGcuGCGGUggaUCUGCGUgaugaacgacggcAGcCGCGc -3'
miRNA:   3'- cUGGCCC--CGCCA---AGACGCA-------------UC-GCGCu -5'
23219 5' -60.1 NC_005259.1 + 35896 0.67 0.488327
Target:  5'- aGACCacGGCGaGccaUUCUGCGUuGCGCGGg -3'
miRNA:   3'- -CUGGccCCGC-C---AAGACGCAuCGCGCU- -5'
23219 5' -60.1 NC_005259.1 + 13432 0.67 0.467999
Target:  5'- cGCCGGGGCcGcgCUagGCGUgaccgucGGCGCGGc -3'
miRNA:   3'- cUGGCCCCGcCaaGA--CGCA-------UCGCGCU- -5'
23219 5' -60.1 NC_005259.1 + 47040 0.68 0.422348
Target:  5'- aGGCCGGGGa---UCUGCGcgAGCGUGu -3'
miRNA:   3'- -CUGGCCCCgccaAGACGCa-UCGCGCu -5'
23219 5' -60.1 NC_005259.1 + 41629 0.68 0.387133
Target:  5'- uGACCauGGuGGCGGUgccggUCUGCG-GGCGCu- -3'
miRNA:   3'- -CUGG--CC-CCGCCA-----AGACGCaUCGCGcu -5'
23219 5' -60.1 NC_005259.1 + 26834 0.69 0.362022
Target:  5'- uGCCGGGGCGG-UCUGCucgGGCa--- -3'
miRNA:   3'- cUGGCCCCGCCaAGACGca-UCGcgcu -5'
23219 5' -60.1 NC_005259.1 + 4299 0.69 0.353907
Target:  5'- gGACCGGcGGCc---CUGCGaugAGCGCGAc -3'
miRNA:   3'- -CUGGCC-CCGccaaGACGCa--UCGCGCU- -5'
23219 5' -60.1 NC_005259.1 + 28005 0.72 0.235828
Target:  5'- uGCCGGGGCGGggUCgccgGgGUuGCGCGc -3'
miRNA:   3'- cUGGCCCCGCCa-AGa---CgCAuCGCGCu -5'
23219 5' -60.1 NC_005259.1 + 23282 0.73 0.213341
Target:  5'- aGACCGGGcGCGGUggUUGgGUaucgggguccGGCGCGGu -3'
miRNA:   3'- -CUGGCCC-CGCCAa-GACgCA----------UCGCGCU- -5'
23219 5' -60.1 NC_005259.1 + 1558 0.75 0.137356
Target:  5'- -uUCGGGGCGGUgacgCUGUG-AGCGCGc -3'
miRNA:   3'- cuGGCCCCGCCAa---GACGCaUCGCGCu -5'
23219 5' -60.1 NC_005259.1 + 49198 0.76 0.117071
Target:  5'- gGACCGGGGCGGUUUc-CGUuGUGCGGg -3'
miRNA:   3'- -CUGGCCCCGCCAAGacGCAuCGCGCU- -5'
23219 5' -60.1 NC_005259.1 + 35311 0.76 0.117071
Target:  5'- uGACCGaGGGCGGUguguacgCgaccccGCGUAGCGCGu -3'
miRNA:   3'- -CUGGC-CCCGCCAa------Ga-----CGCAUCGCGCu -5'
23219 5' -60.1 NC_005259.1 + 53407 1.07 0.0006
Target:  5'- gGACCGGGGCGGUUCUGCGUAGCGCGAc -3'
miRNA:   3'- -CUGGCCCCGCCAAGACGCAUCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.