miRNA display CGI


Results 1 - 3 of 3 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2322 5' -57.8 NC_001414.1 + 1293 0.7 0.057036
Target:  5'- aUUUUgcaagGGCGGgGCcUAGUGGCCGCCc -3'
miRNA:   3'- cAGAGaa---CCGCC-CGaAUCGUCGGCGG- -5'
2322 5' -57.8 NC_001414.1 + 8038 0.7 0.057036
Target:  5'- cGUCUCUgucUGGUuuacgGGGCggUGGCGG-CGCCu -3'
miRNA:   3'- -CAGAGA---ACCG-----CCCGa-AUCGUCgGCGG- -5'
2322 5' -57.8 NC_001414.1 + 3530 1.1 0.000022
Target:  5'- gGUCUCUUGGCGGGCUUAGCAGCCGCCc -3'
miRNA:   3'- -CAGAGAACCGCCCGAAUCGUCGGCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.