miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 63587 0.68 0.3835
Target:  5'- cGCCGccuGGCUGuUCUCguccuccauggcgGCCACCGaCGCc -3'
miRNA:   3'- -CGGCu--CCGGCuAGAG-------------CGGUGGCgGCG- -5'
23220 5' -61.6 NC_005259.1 + 25168 0.68 0.376043
Target:  5'- cCCGuuGGGuCCGAccCguaCGCCGCCGCCGa -3'
miRNA:   3'- cGGC--UCC-GGCUa-Ga--GCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 19305 0.68 0.376043
Target:  5'- cGCCGAGGCacuCGAggaaGCCAUCG-CGCu -3'
miRNA:   3'- -CGGCUCCG---GCUagagCGGUGGCgGCG- -5'
23220 5' -61.6 NC_005259.1 + 26914 0.69 0.314165
Target:  5'- gGCCGGGuuucuugcccucGUgGAUCUCGgcauaCGCCGCUGCu -3'
miRNA:   3'- -CGGCUC------------CGgCUAGAGCg----GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 15761 0.69 0.319259
Target:  5'- gGCCGGGGaggaucucuauggaCCGAUCaUGCUgGCCGCCGg -3'
miRNA:   3'- -CGGCUCC--------------GGCUAGaGCGG-UGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 18326 0.69 0.328883
Target:  5'- aCCGAGGCCGGUgcgUUCGUggucgaCGCCGaCgGCg -3'
miRNA:   3'- cGGCUCCGGCUA---GAGCG------GUGGC-GgCG- -5'
23220 5' -61.6 NC_005259.1 + 38641 0.69 0.328883
Target:  5'- cGCCGAGuuggcgaacucGCCGAaaUCGaCCACCucgcuguugGCCGCc -3'
miRNA:   3'- -CGGCUC-----------CGGCUagAGC-GGUGG---------CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 47475 0.69 0.328883
Target:  5'- aCCGAGGU-GAUCgCGUCACCGaggCGCg -3'
miRNA:   3'- cGGCUCCGgCUAGaGCGGUGGCg--GCG- -5'
23220 5' -61.6 NC_005259.1 + 65464 0.69 0.328883
Target:  5'- -aCGAGGCCGAcuccgcgugUCUgGCUGCCauagGCUGCc -3'
miRNA:   3'- cgGCUCCGGCU---------AGAgCGGUGG----CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 3074 0.69 0.336431
Target:  5'- gGCCGAGGCCGAcaagagaGCCG-CGCaGCg -3'
miRNA:   3'- -CGGCUCCGGCUagag---CGGUgGCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 7570 0.69 0.314165
Target:  5'- cGCCa---CCGuUCgCGCCGCCGCCGCc -3'
miRNA:   3'- -CGGcuccGGCuAGaGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 15161 0.69 0.306995
Target:  5'- gGCCGAGGCCGAg---GCCAuccUCGacaCGCa -3'
miRNA:   3'- -CGGCUCCGGCUagagCGGU---GGCg--GCG- -5'
23220 5' -61.6 NC_005259.1 + 48600 0.69 0.306995
Target:  5'- uGUCGAGcGCgGg---CGCUACCGCCGUg -3'
miRNA:   3'- -CGGCUC-CGgCuagaGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 20662 0.69 0.29995
Target:  5'- aCCGGGGCCGAggaCGCCAugaugUgGUCGCa -3'
miRNA:   3'- cGGCUCCGGCUagaGCGGU-----GgCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 1295 0.69 0.29995
Target:  5'- cCCGAGGUCGAgCUCuaCGCgGUCGUg -3'
miRNA:   3'- cGGCUCCGGCUaGAGcgGUGgCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 26146 0.69 0.29995
Target:  5'- cGCCGAGGCCGAgca-GCCcgaaaaUGcCCGCg -3'
miRNA:   3'- -CGGCUCCGGCUagagCGGug----GC-GGCG- -5'
23220 5' -61.6 NC_005259.1 + 5906 0.69 0.29995
Target:  5'- cGUCGAGGUCGAggugCU-GCgCACCGUCGa -3'
miRNA:   3'- -CGGCUCCGGCUa---GAgCG-GUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 425 0.69 0.29995
Target:  5'- cGUCGAGGaugacgcaCCGAUCUaCGUCACgGUgGCa -3'
miRNA:   3'- -CGGCUCC--------GGCUAGA-GCGGUGgCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 20267 0.69 0.336431
Target:  5'- cGCCG-GGCCGAuggaUCguggacgCGCUACCGCgaGUu -3'
miRNA:   3'- -CGGCuCCGGCU----AGa------GCGGUGGCGg-CG- -5'
23220 5' -61.6 NC_005259.1 + 27260 0.69 0.336431
Target:  5'- cCCGcguAGGaCCGAUacgcCGCCuugaGCCGCCGCu -3'
miRNA:   3'- cGGC---UCC-GGCUAga--GCGG----UGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.