miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 7640 0.71 0.225037
Target:  5'- aCCGucGCCGAgUUCGaCCGCCGUCGUc -3'
miRNA:   3'- cGGCucCGGCUaGAGC-GGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 26095 0.71 0.225037
Target:  5'- cGCCGAGaagacccCCGAgcagacCGCCGCCGCCGg -3'
miRNA:   3'- -CGGCUCc------GGCUaga---GCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 35624 0.71 0.225037
Target:  5'- cGUCGAguaguucgGGCCGc---CGCCGCUGCCGCu -3'
miRNA:   3'- -CGGCU--------CCGGCuagaGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 11818 0.71 0.23062
Target:  5'- aGCuCGucGCUG-UCguacUGCCACCGCCGCa -3'
miRNA:   3'- -CG-GCucCGGCuAGa---GCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 9998 0.71 0.23062
Target:  5'- aGCCGGGGacugauccgcgUCGAUCUCGCCcuuACCGaCCa- -3'
miRNA:   3'- -CGGCUCC-----------GGCUAGAGCGG---UGGC-GGcg -5'
23220 5' -61.6 NC_005259.1 + 29275 0.71 0.23062
Target:  5'- cGCCGuGGaCGAgaUCGCCAacCCGUCGCa -3'
miRNA:   3'- -CGGCuCCgGCUagAGCGGU--GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 43829 0.71 0.23062
Target:  5'- cGCCGgacacaGGGCCGccgCUCGCCauGCCGagCGCa -3'
miRNA:   3'- -CGGC------UCCGGCua-GAGCGG--UGGCg-GCG- -5'
23220 5' -61.6 NC_005259.1 + 44976 0.71 0.23062
Target:  5'- uGCCGAgGGCCGGUgCgacUGCCgaggcACCGCCGa -3'
miRNA:   3'- -CGGCU-CCGGCUA-Ga--GCGG-----UGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 42228 0.7 0.279569
Target:  5'- cGCCGuccccGGCC-AUCUCGaCCACC-UCGCg -3'
miRNA:   3'- -CGGCu----CCGGcUAGAGC-GGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 14866 0.7 0.286238
Target:  5'- -gCGAGGuUCGcgCUgcccgaGCCGCCGCCGUa -3'
miRNA:   3'- cgGCUCC-GGCuaGAg-----CGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 42931 0.7 0.286238
Target:  5'- aGCaUGAGGCC---CUCGCCgugggcgagGCCGCCGUu -3'
miRNA:   3'- -CG-GCUCCGGcuaGAGCGG---------UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 16180 0.7 0.286238
Target:  5'- cGCCGAGGUCcaagaGAUCaUGuCCACC-CCGCc -3'
miRNA:   3'- -CGGCUCCGG-----CUAGaGC-GGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 53250 0.7 0.286238
Target:  5'- cGCCGAcaCCG---UCGCCGCCGCUGUc -3'
miRNA:   3'- -CGGCUccGGCuagAGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 8329 0.7 0.279569
Target:  5'- uGCCGAcggcgaucaGCCGGUCaCGCUGCUGCCGg -3'
miRNA:   3'- -CGGCUc--------CGGCUAGaGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 2514 0.7 0.279569
Target:  5'- aGCaCGAGacccaaGCCGA---CGCCACCGCgCGCa -3'
miRNA:   3'- -CG-GCUC------CGGCUagaGCGGUGGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 44361 0.7 0.273025
Target:  5'- gGCuCGuuGCCGAggCUCGCCACa-CCGCc -3'
miRNA:   3'- -CG-GCucCGGCUa-GAGCGGUGgcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37225 0.7 0.273025
Target:  5'- cGCCGGGGCgcuggcccgugcCGGaUUgGCUGCCGCCGUu -3'
miRNA:   3'- -CGGCUCCG------------GCUaGAgCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 68572 0.7 0.266604
Target:  5'- aCCGAGGUgGAcCUCguauccggcgGCCACCGCaGCg -3'
miRNA:   3'- cGGCUCCGgCUaGAG----------CGGUGGCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 25069 0.7 0.266604
Target:  5'- gGCaaGGGUgGcgCU-GCCACCGCCGCu -3'
miRNA:   3'- -CGgcUCCGgCuaGAgCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37156 0.7 0.293032
Target:  5'- aGCCGucaccGCCGcgCcCGCCGaCGCCGCg -3'
miRNA:   3'- -CGGCuc---CGGCuaGaGCGGUgGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.