miRNA display CGI


Results 101 - 120 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 5906 0.69 0.29995
Target:  5'- cGUCGAGGUCGAggugCU-GCgCACCGUCGa -3'
miRNA:   3'- -CGGCUCCGGCUa---GAgCG-GUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 425 0.69 0.29995
Target:  5'- cGUCGAGGaugacgcaCCGAUCUaCGUCACgGUgGCa -3'
miRNA:   3'- -CGGCUCC--------GGCUAGA-GCGGUGgCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 63121 0.7 0.295784
Target:  5'- cGUCGAGgguggugaggucguaGCCGcuGUcCUCGCCcacguugagcaGCCGCCGCa -3'
miRNA:   3'- -CGGCUC---------------CGGC--UA-GAGCGG-----------UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 61951 0.7 0.293032
Target:  5'- uGCCGGGGCCaccgcagccUCacgCGCCGCUGCCu- -3'
miRNA:   3'- -CGGCUCCGGcu-------AGa--GCGGUGGCGGcg -5'
23220 5' -61.6 NC_005259.1 + 37156 0.7 0.293032
Target:  5'- aGCCGucaccGCCGcgCcCGCCGaCGCCGCg -3'
miRNA:   3'- -CGGCuc---CGGCuaGaGCGGUgGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 55905 0.7 0.293032
Target:  5'- cGCCGGGGUCG--CUgGCCagACCGCUGg -3'
miRNA:   3'- -CGGCUCCGGCuaGAgCGG--UGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 48676 0.7 0.293032
Target:  5'- cCCGAGGCUGAUUUUGCCGacauCUGUCa- -3'
miRNA:   3'- cGGCUCCGGCUAGAGCGGU----GGCGGcg -5'
23220 5' -61.6 NC_005259.1 + 14866 0.7 0.286238
Target:  5'- -gCGAGGuUCGcgCUgcccgaGCCGCCGCCGUa -3'
miRNA:   3'- cgGCUCC-GGCuaGAg-----CGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 42931 0.7 0.286238
Target:  5'- aGCaUGAGGCC---CUCGCCgugggcgagGCCGCCGUu -3'
miRNA:   3'- -CG-GCUCCGGcuaGAGCGG---------UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 16180 0.7 0.286238
Target:  5'- cGCCGAGGUCcaagaGAUCaUGuCCACC-CCGCc -3'
miRNA:   3'- -CGGCUCCGG-----CUAGaGC-GGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 53250 0.7 0.286238
Target:  5'- cGCCGAcaCCG---UCGCCGCCGCUGUc -3'
miRNA:   3'- -CGGCUccGGCuagAGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 2514 0.7 0.279569
Target:  5'- aGCaCGAGacccaaGCCGA---CGCCACCGCgCGCa -3'
miRNA:   3'- -CG-GCUC------CGGCUagaGCGGUGGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 8329 0.7 0.279569
Target:  5'- uGCCGAcggcgaucaGCCGGUCaCGCUGCUGCCGg -3'
miRNA:   3'- -CGGCUc--------CGGCUAGaGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 42228 0.7 0.279569
Target:  5'- cGCCGuccccGGCC-AUCUCGaCCACC-UCGCg -3'
miRNA:   3'- -CGGCu----CCGGcUAGAGC-GGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37225 0.7 0.273025
Target:  5'- cGCCGGGGCgcuggcccgugcCGGaUUgGCUGCCGCCGUu -3'
miRNA:   3'- -CGGCUCCG------------GCUaGAgCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 44361 0.7 0.273025
Target:  5'- gGCuCGuuGCCGAggCUCGCCACa-CCGCc -3'
miRNA:   3'- -CG-GCucCGGCUa-GAGCGGUGgcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 68572 0.7 0.266604
Target:  5'- aCCGAGGUgGAcCUCguauccggcgGCCACCGCaGCg -3'
miRNA:   3'- cGGCUCCGgCUaGAG----------CGGUGGCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 25069 0.7 0.266604
Target:  5'- gGCaaGGGUgGcgCU-GCCACCGCCGCu -3'
miRNA:   3'- -CGgcUCCGgCuaGAgCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 30765 0.7 0.260305
Target:  5'- uGCCGAcGCCGGUggCaCCGCUGCCGUu -3'
miRNA:   3'- -CGGCUcCGGCUAgaGcGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 47611 0.71 0.248073
Target:  5'- cGgCGAGGCUGAgguUCUUGUCGUCGCCGa -3'
miRNA:   3'- -CgGCUCCGGCU---AGAGCGGUGGCGGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.