miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 26402 0.67 0.445639
Target:  5'- uCCGAcGCCGggCgcggCGgUGCCGCCGUa -3'
miRNA:   3'- cGGCUcCGGCuaGa---GCgGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 26558 0.66 0.473535
Target:  5'- aCCGAGGCUGua---GCCGCCGa-GCa -3'
miRNA:   3'- cGGCUCCGGCuagagCGGUGGCggCG- -5'
23220 5' -61.6 NC_005259.1 + 26914 0.69 0.314165
Target:  5'- gGCCGGGuuucuugcccucGUgGAUCUCGgcauaCGCCGCUGCu -3'
miRNA:   3'- -CGGCUC------------CGgCUAGAGCg----GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 27260 0.69 0.336431
Target:  5'- cCCGcguAGGaCCGAUacgcCGCCuugaGCCGCCGCu -3'
miRNA:   3'- cGGC---UCC-GGCUAga--GCGG----UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 27477 0.83 0.032557
Target:  5'- gGCCGGGGUCGGUgUgGCCACCGCCccacGCg -3'
miRNA:   3'- -CGGCUCCGGCUAgAgCGGUGGCGG----CG- -5'
23220 5' -61.6 NC_005259.1 + 27507 0.72 0.219569
Target:  5'- cGCCGAGGUCGAcgugUC-CGCacaCGCCGUc -3'
miRNA:   3'- -CGGCUCCGGCU----AGaGCGgugGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 28005 0.68 0.359827
Target:  5'- uGCCGGGGCgGGg-UCGCCGgggUUGCgCGCg -3'
miRNA:   3'- -CGGCUCCGgCUagAGCGGU---GGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 28525 0.67 0.418686
Target:  5'- cGCCGAGGaaggauucaaGAUCaUgGCCACC-CCGUu -3'
miRNA:   3'- -CGGCUCCgg--------CUAG-AgCGGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 28640 0.67 0.418686
Target:  5'- aCCGGuGCCGAcacCGCCgagGCCGCCGUc -3'
miRNA:   3'- cGGCUcCGGCUagaGCGG---UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 28738 0.67 0.409923
Target:  5'- gGCCGAGGguuacgcgcCCGAgcgugagaUCGUCGCCGgUGCc -3'
miRNA:   3'- -CGGCUCC---------GGCUag------AGCGGUGGCgGCG- -5'
23220 5' -61.6 NC_005259.1 + 28965 0.73 0.184401
Target:  5'- cGCCGAGGUCGG---UGCCGagGCCGCg -3'
miRNA:   3'- -CGGCUCCGGCUagaGCGGUggCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 29275 0.71 0.23062
Target:  5'- cGCCGuGGaCGAgaUCGCCAacCCGUCGCa -3'
miRNA:   3'- -CGGCuCCgGCUagAGCGGU--GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 30158 0.66 0.464137
Target:  5'- aCCG-GGCCGccuacaggC-CGCCACaGCCGCc -3'
miRNA:   3'- cGGCuCCGGCua------GaGCGGUGgCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 30765 0.7 0.260305
Target:  5'- uGCCGAcGCCGGUggCaCCGCUGCCGUu -3'
miRNA:   3'- -CGGCUcCGGCUAgaGcGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 30834 0.71 0.244497
Target:  5'- cGCCGAGGUCGGcaacCUgcaccucaagguagcCGUCAUCGCCGUc -3'
miRNA:   3'- -CGGCUCCGGCUa---GA---------------GCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 31712 0.67 0.409053
Target:  5'- aCCGAuGCCGGUCUucucugaggugacCGCgC-CUGCCGCg -3'
miRNA:   3'- cGGCUcCGGCUAGA-------------GCG-GuGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 31749 0.66 0.454837
Target:  5'- -nCGAGcGCUGGUgUCcCCACCGCCcCg -3'
miRNA:   3'- cgGCUC-CGGCUAgAGcGGUGGCGGcG- -5'
23220 5' -61.6 NC_005259.1 + 32803 0.8 0.061032
Target:  5'- cCCGAGGUCGAUCcCGaCgCACCGCCGUc -3'
miRNA:   3'- cGGCUCCGGCUAGaGC-G-GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 32983 0.66 0.464137
Target:  5'- uGCCGAuGCCGAgggUGCCGCCacGCC-Cg -3'
miRNA:   3'- -CGGCUcCGGCUagaGCGGUGG--CGGcG- -5'
23220 5' -61.6 NC_005259.1 + 33133 0.66 0.492611
Target:  5'- aGCCGccGCgcgUGAUCUUGCCguagACCGCCu- -3'
miRNA:   3'- -CGGCucCG---GCUAGAGCGG----UGGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.