miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 33526 0.66 0.473535
Target:  5'- aCCGAGGUCGAcccaCGCCugcugAUCGUCGCc -3'
miRNA:   3'- cGGCUCCGGCUaga-GCGG-----UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 33599 0.66 0.497435
Target:  5'- aCCGAGGCgCGGUCgagcugcaaccgGCCACCGaaacuguugcgaaUCGCg -3'
miRNA:   3'- cGGCUCCG-GCUAGag----------CGGUGGC-------------GGCG- -5'
23220 5' -61.6 NC_005259.1 + 35313 0.66 0.454837
Target:  5'- aCCGAGGgCGGUgUguaCGCgACC-CCGCg -3'
miRNA:   3'- cGGCUCCgGCUAgA---GCGgUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 35479 0.75 0.134549
Target:  5'- cGCCcgguAGGCCGAacgaUCcuggguuggccccgUUGCCGCCGCCGCc -3'
miRNA:   3'- -CGGc---UCCGGCU----AG--------------AGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 35540 0.79 0.068004
Target:  5'- cGCCGucGCCGAUCcgcccgaugacUUGCCGCCGaCCGCc -3'
miRNA:   3'- -CGGCucCGGCUAG-----------AGCGGUGGC-GGCG- -5'
23220 5' -61.6 NC_005259.1 + 35624 0.71 0.225037
Target:  5'- cGUCGAguaguucgGGCCGc---CGCCGCUGCCGCu -3'
miRNA:   3'- -CGGCU--------CCGGCuagaGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 35861 0.66 0.502281
Target:  5'- uCCGccGCCGcGUCcaccgcaGCCGCCGCCGa -3'
miRNA:   3'- cGGCucCGGC-UAGag-----CGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 36139 0.67 0.401276
Target:  5'- cGCCG-GGCUG-UCcgUCGCCAUgGCCa- -3'
miRNA:   3'- -CGGCuCCGGCuAG--AGCGGUGgCGGcg -5'
23220 5' -61.6 NC_005259.1 + 36177 0.68 0.384335
Target:  5'- uGCCGAGGUCGAga--GCCugCGUacugaUGCc -3'
miRNA:   3'- -CGGCUCCGGCUagagCGGugGCG-----GCG- -5'
23220 5' -61.6 NC_005259.1 + 36444 0.68 0.344105
Target:  5'- cGCCGAGGUCGA-C-CGCgucgagggugagCACCGCC-Ca -3'
miRNA:   3'- -CGGCUCCGGCUaGaGCG------------GUGGCGGcG- -5'
23220 5' -61.6 NC_005259.1 + 36656 0.81 0.05046
Target:  5'- -gCGAGccGCCGccCUCGCCGCCGCCGCc -3'
miRNA:   3'- cgGCUC--CGGCuaGAGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37018 0.74 0.153906
Target:  5'- cGCCGGGGaacaugacaaugUCGAUCUuggugccCGCCACCGCCcacgGCg -3'
miRNA:   3'- -CGGCUCC------------GGCUAGA-------GCGGUGGCGG----CG- -5'
23220 5' -61.6 NC_005259.1 + 37156 0.7 0.293032
Target:  5'- aGCCGucaccGCCGcgCcCGCCGaCGCCGCg -3'
miRNA:   3'- -CGGCuc---CGGCuaGaGCGGUgGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37195 0.76 0.107114
Target:  5'- aGCUGcGGCCcuugC-CGCCACCGCCGCc -3'
miRNA:   3'- -CGGCuCCGGcua-GaGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37225 0.7 0.273025
Target:  5'- cGCCGGGGCgcuggcccgugcCGGaUUgGCUGCCGCCGUu -3'
miRNA:   3'- -CGGCUCCG------------GCUaGAgCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37563 0.68 0.351904
Target:  5'- uCCGAuGUCGAcugCUCGCCGCCcgcGCCGa -3'
miRNA:   3'- cGGCUcCGGCUa--GAGCGGUGG---CGGCg -5'
23220 5' -61.6 NC_005259.1 + 37612 0.72 0.216343
Target:  5'- gGCCGAGcucGCUGAUggggaugaugugCUgcccgaugaccgcacCGCCGCCGCCGCc -3'
miRNA:   3'- -CGGCUC---CGGCUA------------GA---------------GCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 38517 0.66 0.473535
Target:  5'- cGCCGuuGUagaGAUagaacucgCGCC-CCGCCGCa -3'
miRNA:   3'- -CGGCucCGg--CUAga------GCGGuGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 38641 0.69 0.328883
Target:  5'- cGCCGAGuuggcgaacucGCCGAaaUCGaCCACCucgcuguugGCCGCc -3'
miRNA:   3'- -CGGCUC-----------CGGCUagAGC-GGUGG---------CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 42228 0.7 0.279569
Target:  5'- cGCCGuccccGGCC-AUCUCGaCCACC-UCGCg -3'
miRNA:   3'- -CGGCu----CCGGcUAGAGC-GGUGGcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.