Results 81 - 100 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 35861 | 0.66 | 0.502281 |
Target: 5'- uCCGccGCCGcGUCcaccgcaGCCGCCGCCGa -3' miRNA: 3'- cGGCucCGGC-UAGag-----CGGUGGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 35624 | 0.71 | 0.225037 |
Target: 5'- cGUCGAguaguucgGGCCGc---CGCCGCUGCCGCu -3' miRNA: 3'- -CGGCU--------CCGGCuagaGCGGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 35540 | 0.79 | 0.068004 |
Target: 5'- cGCCGucGCCGAUCcgcccgaugacUUGCCGCCGaCCGCc -3' miRNA: 3'- -CGGCucCGGCUAG-----------AGCGGUGGC-GGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 35479 | 0.75 | 0.134549 |
Target: 5'- cGCCcgguAGGCCGAacgaUCcuggguuggccccgUUGCCGCCGCCGCc -3' miRNA: 3'- -CGGc---UCCGGCU----AG--------------AGCGGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 35313 | 0.66 | 0.454837 |
Target: 5'- aCCGAGGgCGGUgUguaCGCgACC-CCGCg -3' miRNA: 3'- cGGCUCCgGCUAgA---GCGgUGGcGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 33599 | 0.66 | 0.497435 |
Target: 5'- aCCGAGGCgCGGUCgagcugcaaccgGCCACCGaaacuguugcgaaUCGCg -3' miRNA: 3'- cGGCUCCG-GCUAGag----------CGGUGGC-------------GGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 33526 | 0.66 | 0.473535 |
Target: 5'- aCCGAGGUCGAcccaCGCCugcugAUCGUCGCc -3' miRNA: 3'- cGGCUCCGGCUaga-GCGG-----UGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 33133 | 0.66 | 0.492611 |
Target: 5'- aGCCGccGCgcgUGAUCUUGCCguagACCGCCu- -3' miRNA: 3'- -CGGCucCG---GCUAGAGCGG----UGGCGGcg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 32983 | 0.66 | 0.464137 |
Target: 5'- uGCCGAuGCCGAgggUGCCGCCacGCC-Cg -3' miRNA: 3'- -CGGCUcCGGCUagaGCGGUGG--CGGcG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 32803 | 0.8 | 0.061032 |
Target: 5'- cCCGAGGUCGAUCcCGaCgCACCGCCGUc -3' miRNA: 3'- cGGCUCCGGCUAGaGC-G-GUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 31749 | 0.66 | 0.454837 |
Target: 5'- -nCGAGcGCUGGUgUCcCCACCGCCcCg -3' miRNA: 3'- cgGCUC-CGGCUAgAGcGGUGGCGGcG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 31712 | 0.67 | 0.409053 |
Target: 5'- aCCGAuGCCGGUCUucucugaggugacCGCgC-CUGCCGCg -3' miRNA: 3'- cGGCUcCGGCUAGA-------------GCG-GuGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 30834 | 0.71 | 0.244497 |
Target: 5'- cGCCGAGGUCGGcaacCUgcaccucaagguagcCGUCAUCGCCGUc -3' miRNA: 3'- -CGGCUCCGGCUa---GA---------------GCGGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 30765 | 0.7 | 0.260305 |
Target: 5'- uGCCGAcGCCGGUggCaCCGCUGCCGUu -3' miRNA: 3'- -CGGCUcCGGCUAgaGcGGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 30158 | 0.66 | 0.464137 |
Target: 5'- aCCG-GGCCGccuacaggC-CGCCACaGCCGCc -3' miRNA: 3'- cGGCuCCGGCua------GaGCGGUGgCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 29275 | 0.71 | 0.23062 |
Target: 5'- cGCCGuGGaCGAgaUCGCCAacCCGUCGCa -3' miRNA: 3'- -CGGCuCCgGCUagAGCGGU--GGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 28965 | 0.73 | 0.184401 |
Target: 5'- cGCCGAGGUCGG---UGCCGagGCCGCg -3' miRNA: 3'- -CGGCUCCGGCUagaGCGGUggCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 28738 | 0.67 | 0.409923 |
Target: 5'- gGCCGAGGguuacgcgcCCGAgcgugagaUCGUCGCCGgUGCc -3' miRNA: 3'- -CGGCUCC---------GGCUag------AGCGGUGGCgGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 28640 | 0.67 | 0.418686 |
Target: 5'- aCCGGuGCCGAcacCGCCgagGCCGCCGUc -3' miRNA: 3'- cGGCUcCGGCUagaGCGG---UGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 28525 | 0.67 | 0.418686 |
Target: 5'- cGCCGAGGaaggauucaaGAUCaUgGCCACC-CCGUu -3' miRNA: 3'- -CGGCUCCgg--------CUAG-AgCGGUGGcGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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