miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 60809 0.72 0.214746
Target:  5'- cCCGAGGCCGGaaaucgucggcgaugCUgGCCACCaUCGCg -3'
miRNA:   3'- cGGCUCCGGCUa--------------GAgCGGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37612 0.72 0.216343
Target:  5'- gGCCGAGcucGCUGAUggggaugaugugCUgcccgaugaccgcacCGCCGCCGCCGCc -3'
miRNA:   3'- -CGGCUC---CGGCUA------------GA---------------GCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 43296 0.72 0.216343
Target:  5'- cGCCGAcgcgcccgccugaauGGCUGcgUUgGCCACCGCCuugGCg -3'
miRNA:   3'- -CGGCU---------------CCGGCuaGAgCGGUGGCGG---CG- -5'
23220 5' -61.6 NC_005259.1 + 1357 0.72 0.219569
Target:  5'- uGCCuacuGGGCCG--CUCGCCgcGCCGcCCGCg -3'
miRNA:   3'- -CGGc---UCCGGCuaGAGCGG--UGGC-GGCG- -5'
23220 5' -61.6 NC_005259.1 + 8753 0.72 0.219569
Target:  5'- cGUCGAGGUCGAggccCUUgGCCAgCGCgGCg -3'
miRNA:   3'- -CGGCUCCGGCUa---GAG-CGGUgGCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 25682 0.72 0.219569
Target:  5'- aGUCGAGGCCGGUgUC-CCACC-CCa- -3'
miRNA:   3'- -CGGCUCCGGCUAgAGcGGUGGcGGcg -5'
23220 5' -61.6 NC_005259.1 + 27507 0.72 0.219569
Target:  5'- cGCCGAGGUCGAcgugUC-CGCacaCGCCGUc -3'
miRNA:   3'- -CGGCUCCGGCU----AGaGCGgugGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 5532 0.72 0.208974
Target:  5'- aGCUGuGGCUGcUCUCGCCcgagGCCGCg -3'
miRNA:   3'- -CGGCuCCGGCuAGAGCGGugg-CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 48121 0.72 0.203843
Target:  5'- aCCGAGcacaCCGc-CUCGaCCACCGCCGCc -3'
miRNA:   3'- cGGCUCc---GGCuaGAGC-GGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 56887 0.72 0.203843
Target:  5'- aGCCGAccGCCaAUCgcagCGUgGCCGCCGCa -3'
miRNA:   3'- -CGGCUc-CGGcUAGa---GCGgUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 46909 0.73 0.172658
Target:  5'- cGCCGAGcaguccgcgugcgccGCCGAgCUugcccgccgCGCCGCCGaCCGCg -3'
miRNA:   3'- -CGGCUC---------------CGGCUaGA---------GCGGUGGC-GGCG- -5'
23220 5' -61.6 NC_005259.1 + 19447 0.73 0.179803
Target:  5'- cCCGAGGCUGucaUCGagACCGCCGUg -3'
miRNA:   3'- cGGCUCCGGCuagAGCggUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 63182 0.73 0.179803
Target:  5'- cGCCGAGGugaucgcaccCCGGUCgugCGCCucgACCGCCu- -3'
miRNA:   3'- -CGGCUCC----------GGCUAGa--GCGG---UGGCGGcg -5'
23220 5' -61.6 NC_005259.1 + 28965 0.73 0.184401
Target:  5'- cGCCGAGGUCGG---UGCCGagGCCGCg -3'
miRNA:   3'- -CGGCUCCGGCUagaGCGGUggCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 54735 0.73 0.184401
Target:  5'- aGCCGAGGCugccgacagCGAUCagGCCGCCGaCC-Ca -3'
miRNA:   3'- -CGGCUCCG---------GCUAGagCGGUGGC-GGcG- -5'
23220 5' -61.6 NC_005259.1 + 5429 0.73 0.189102
Target:  5'- cGUCGAGGuCUGcgCcCGCUGCCGCCGa -3'
miRNA:   3'- -CGGCUCC-GGCuaGaGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 47928 0.73 0.189102
Target:  5'- cGCCGAGGCCcuggaagccgauGAcggCggUGCCgaugGCCGCCGCg -3'
miRNA:   3'- -CGGCUCCGG------------CUa--Ga-GCGG----UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 14299 0.72 0.193423
Target:  5'- aCCGAugucggugcguauGGCCGccCUCGaCGCCGCCGCc -3'
miRNA:   3'- cGGCU-------------CCGGCuaGAGCgGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 62129 0.72 0.193909
Target:  5'- aCCGAGGUgauCG-UCUCGaCCACCucagGCCGCa -3'
miRNA:   3'- cGGCUCCG---GCuAGAGC-GGUGG----CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 51993 0.72 0.198326
Target:  5'- aCCGAcGCCGAUCUCGaccggaUgcacgagcgucagGCCGCCGCa -3'
miRNA:   3'- cGGCUcCGGCUAGAGCg-----G-------------UGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.