Results 101 - 120 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 9998 | 0.71 | 0.23062 |
Target: 5'- aGCCGGGGacugauccgcgUCGAUCUCGCCcuuACCGaCCa- -3' miRNA: 3'- -CGGCUCC-----------GGCUAGAGCGG---UGGC-GGcg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 29275 | 0.71 | 0.23062 |
Target: 5'- cGCCGuGGaCGAgaUCGCCAacCCGUCGCa -3' miRNA: 3'- -CGGCuCCgGCUagAGCGGU--GGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 43829 | 0.71 | 0.23062 |
Target: 5'- cGCCGgacacaGGGCCGccgCUCGCCauGCCGagCGCa -3' miRNA: 3'- -CGGC------UCCGGCua-GAGCGG--UGGCg-GCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 44976 | 0.71 | 0.23062 |
Target: 5'- uGCCGAgGGCCGGUgCgacUGCCgaggcACCGCCGa -3' miRNA: 3'- -CGGCU-CCGGCUA-Ga--GCGG-----UGGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 60200 | 0.71 | 0.23062 |
Target: 5'- aCCGGGccacgaucucGCCGAUCUCGUCGgCGCUGa -3' miRNA: 3'- cGGCUC----------CGGCUAGAGCGGUgGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 1357 | 0.72 | 0.219569 |
Target: 5'- uGCCuacuGGGCCG--CUCGCCgcGCCGcCCGCg -3' miRNA: 3'- -CGGc---UCCGGCuaGAGCGG--UGGC-GGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 43296 | 0.72 | 0.216343 |
Target: 5'- cGCCGAcgcgcccgccugaauGGCUGcgUUgGCCACCGCCuugGCg -3' miRNA: 3'- -CGGCU---------------CCGGCuaGAgCGGUGGCGG---CG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 5429 | 0.73 | 0.189102 |
Target: 5'- cGUCGAGGuCUGcgCcCGCUGCCGCCGa -3' miRNA: 3'- -CGGCUCC-GGCuaGaGCGGUGGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 47928 | 0.73 | 0.189102 |
Target: 5'- cGCCGAGGCCcuggaagccgauGAcggCggUGCCgaugGCCGCCGCg -3' miRNA: 3'- -CGGCUCCGG------------CUa--Ga-GCGG----UGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 14299 | 0.72 | 0.193423 |
Target: 5'- aCCGAugucggugcguauGGCCGccCUCGaCGCCGCCGCc -3' miRNA: 3'- cGGCU-------------CCGGCuaGAGCgGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 62129 | 0.72 | 0.193909 |
Target: 5'- aCCGAGGUgauCG-UCUCGaCCACCucagGCCGCa -3' miRNA: 3'- cGGCUCCG---GCuAGAGC-GGUGG----CGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 51993 | 0.72 | 0.198326 |
Target: 5'- aCCGAcGCCGAUCUCGaccggaUgcacgagcgucagGCCGCCGCa -3' miRNA: 3'- cGGCUcCGGCUAGAGCg-----G-------------UGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 56887 | 0.72 | 0.203843 |
Target: 5'- aGCCGAccGCCaAUCgcagCGUgGCCGCCGCa -3' miRNA: 3'- -CGGCUc-CGGcUAGa---GCGgUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 48121 | 0.72 | 0.203843 |
Target: 5'- aCCGAGcacaCCGc-CUCGaCCACCGCCGCc -3' miRNA: 3'- cGGCUCc---GGCuaGAGC-GGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 5532 | 0.72 | 0.208974 |
Target: 5'- aGCUGuGGCUGcUCUCGCCcgagGCCGCg -3' miRNA: 3'- -CGGCuCCGGCuAGAGCGGugg-CGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 46532 | 0.72 | 0.208974 |
Target: 5'- gGUCGGGgaucGCCGAgaUCUgGUCGCCGaCCGCg -3' miRNA: 3'- -CGGCUC----CGGCU--AGAgCGGUGGC-GGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 9206 | 0.72 | 0.208974 |
Target: 5'- -aCGGGGCCGGa-UCGagCACCGCUGCg -3' miRNA: 3'- cgGCUCCGGCUagAGCg-GUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 46664 | 0.72 | 0.213686 |
Target: 5'- gGuuGAGGUucucggCGAgCUCggccugaGCCGCCGCCGCg -3' miRNA: 3'- -CggCUCCG------GCUaGAG-------CGGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 60809 | 0.72 | 0.214746 |
Target: 5'- cCCGAGGCCGGaaaucgucggcgaugCUgGCCACCaUCGCg -3' miRNA: 3'- cGGCUCCGGCUa--------------GAgCGGUGGcGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 37612 | 0.72 | 0.216343 |
Target: 5'- gGCCGAGcucGCUGAUggggaugaugugCUgcccgaugaccgcacCGCCGCCGCCGCc -3' miRNA: 3'- -CGGCUC---CGGCUA------------GA---------------GCGGUGGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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