miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 31749 0.66 0.454837
Target:  5'- -nCGAGcGCUGGUgUCcCCACCGCCcCg -3'
miRNA:   3'- cgGCUC-CGGCUAgAGcGGUGGCGGcG- -5'
23220 5' -61.6 NC_005259.1 + 48436 0.66 0.464137
Target:  5'- aCCGAGGCgCGAggcagCggcagCGCguucCACCGCgCGCc -3'
miRNA:   3'- cGGCUCCG-GCUa----Ga----GCG----GUGGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 49230 0.66 0.454837
Target:  5'- cUCGucGUCGGaCUCGaCCGCUGCCGUc -3'
miRNA:   3'- cGGCucCGGCUaGAGC-GGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 46981 0.66 0.454837
Target:  5'- cGCCGAugaucgGGCCGAgggugCGCCACgcgaggaaGCCGa -3'
miRNA:   3'- -CGGCU------CCGGCUaga--GCGGUGg-------CGGCg -5'
23220 5' -61.6 NC_005259.1 + 15278 0.66 0.464137
Target:  5'- cGCCGAcGaGCaagCGAUCUacacCGCCGaccUCGCCGCc -3'
miRNA:   3'- -CGGCU-C-CG---GCUAGA----GCGGU---GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 26558 0.66 0.473535
Target:  5'- aCCGAGGCUGua---GCCGCCGa-GCa -3'
miRNA:   3'- cGGCUCCGGCuagagCGGUGGCggCG- -5'
23220 5' -61.6 NC_005259.1 + 32983 0.66 0.464137
Target:  5'- uGCCGAuGCCGAgggUGCCGCCacGCC-Cg -3'
miRNA:   3'- -CGGCUcCGGCUagaGCGGUGG--CGGcG- -5'
23220 5' -61.6 NC_005259.1 + 44512 0.66 0.502281
Target:  5'- uGCCcuGGCCacccaCGCCGCCGCCcgGCa -3'
miRNA:   3'- -CGGcuCCGGcuagaGCGGUGGCGG--CG- -5'
23220 5' -61.6 NC_005259.1 + 33526 0.66 0.473535
Target:  5'- aCCGAGGUCGAcccaCGCCugcugAUCGUCGCc -3'
miRNA:   3'- cGGCUCCGGCUaga-GCGG-----UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 2944 0.66 0.473535
Target:  5'- uCCaAGGCgcgCGAgaccCUgGCCACCGCgCGCg -3'
miRNA:   3'- cGGcUCCG---GCUa---GAgCGGUGGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 30158 0.66 0.464137
Target:  5'- aCCG-GGCCGccuacaggC-CGCCACaGCCGCc -3'
miRNA:   3'- cGGCuCCGGCua------GaGCGGUGgCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 50881 0.66 0.473535
Target:  5'- uGCCGAuGGUCgGAUCagGa-ACCGCUGCg -3'
miRNA:   3'- -CGGCU-CCGG-CUAGagCggUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 63659 0.66 0.464137
Target:  5'- gGCCGGGacGCCGGacacCUCgGgCACCGgCGCg -3'
miRNA:   3'- -CGGCUC--CGGCUa---GAG-CgGUGGCgGCG- -5'
23220 5' -61.6 NC_005259.1 + 35313 0.66 0.454837
Target:  5'- aCCGAGGgCGGUgUguaCGCgACC-CCGCg -3'
miRNA:   3'- cGGCUCCgGCUAgA---GCGgUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 67058 0.66 0.473535
Target:  5'- cCCGuGcGCCGAUCUCaaggGCCAgCGUgaCGCc -3'
miRNA:   3'- cGGCuC-CGGCUAGAG----CGGUgGCG--GCG- -5'
23220 5' -61.6 NC_005259.1 + 66020 0.66 0.477321
Target:  5'- cUCGGGGCCgcacguguugcgcgcGAgCUCGacguagaCGCCGCCGUg -3'
miRNA:   3'- cGGCUCCGG---------------CUaGAGCg------GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 38517 0.66 0.473535
Target:  5'- cGCCGuuGUagaGAUagaacucgCGCC-CCGCCGCa -3'
miRNA:   3'- -CGGCucCGg--CUAga------GCGGuGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 20457 0.66 0.473535
Target:  5'- aGCCGGGGUgG--CUCGgaUgACCGCCGUc -3'
miRNA:   3'- -CGGCUCCGgCuaGAGC--GgUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 55553 0.66 0.464137
Target:  5'- cGUCGAGgauGCCGAaagCGagcaggaacaUCACCGCCGCg -3'
miRNA:   3'- -CGGCUC---CGGCUagaGC----------GGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 5165 0.66 0.473535
Target:  5'- aCUGAGGggaCCGAccaaugaaacUCUCcgaCGCCGCCGCc -3'
miRNA:   3'- cGGCUCC---GGCU----------AGAGcg-GUGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.