miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 53163 1.12 0.000248
Target:  5'- cGCCGAGGCCGAUCUCGCCACCGCCGCc -3'
miRNA:   3'- -CGGCUCCGGCUAGAGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 1850 0.94 0.00493
Target:  5'- cGCCGAGGCCGAgaaaGCCGCCGCCGCg -3'
miRNA:   3'- -CGGCUCCGGCUagagCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 6937 0.84 0.029162
Target:  5'- cGCCuuGAGGCCGAgCUCGCCGCCGaCgGCa -3'
miRNA:   3'- -CGG--CUCCGGCUaGAGCGGUGGC-GgCG- -5'
23220 5' -61.6 NC_005259.1 + 27477 0.83 0.032557
Target:  5'- gGCCGGGGUCGGUgUgGCCACCGCCccacGCg -3'
miRNA:   3'- -CGGCUCCGGCUAgAgCGGUGGCGG----CG- -5'
23220 5' -61.6 NC_005259.1 + 58692 0.83 0.036339
Target:  5'- -gCGGGGUCGG-CUCGUCGCCGCCGCc -3'
miRNA:   3'- cgGCUCCGGCUaGAGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 6109 0.82 0.040552
Target:  5'- cGCCGAGGCCGAg---GCCGCCGCuaCGCg -3'
miRNA:   3'- -CGGCUCCGGCUagagCGGUGGCG--GCG- -5'
23220 5' -61.6 NC_005259.1 + 36656 0.81 0.05046
Target:  5'- -gCGAGccGCCGccCUCGCCGCCGCCGCc -3'
miRNA:   3'- cgGCUC--CGGCuaGAGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 32803 0.8 0.061032
Target:  5'- cCCGAGGUCGAUCcCGaCgCACCGCCGUc -3'
miRNA:   3'- cGGCUCCGGCUAGaGC-G-GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 35540 0.79 0.068004
Target:  5'- cGCCGucGCCGAUCcgcccgaugacUUGCCGCCGaCCGCc -3'
miRNA:   3'- -CGGCucCGGCUAG-----------AGCGGUGGC-GGCG- -5'
23220 5' -61.6 NC_005259.1 + 45405 0.78 0.08209
Target:  5'- cGCCGAGcgcGCUGA--UgGCCGCCGCCGCu -3'
miRNA:   3'- -CGGCUC---CGGCUagAgCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 46869 0.78 0.08209
Target:  5'- gGUCGAGGCUugaAUCgCGCCGCCGcCCGCg -3'
miRNA:   3'- -CGGCUCCGGc--UAGaGCGGUGGC-GGCG- -5'
23220 5' -61.6 NC_005259.1 + 45315 0.78 0.084318
Target:  5'- cGCCGAGGCCGccgCcgaacugcgUgGCCugCGCCGCc -3'
miRNA:   3'- -CGGCUCCGGCua-G---------AgCGGugGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 45628 0.77 0.093815
Target:  5'- cGCCG-GGCCGggCagcgCGCCgguGCCGCCGUg -3'
miRNA:   3'- -CGGCuCCGGCuaGa---GCGG---UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37195 0.76 0.107114
Target:  5'- aGCUGcGGCCcuugC-CGCCACCGCCGCc -3'
miRNA:   3'- -CGGCuCCGGcua-GaGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 45013 0.76 0.112914
Target:  5'- cGCCGGGGCCGcgC-CGCCcugcuucaugaGCUGCuCGCg -3'
miRNA:   3'- -CGGCUCCGGCuaGaGCGG-----------UGGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 13432 0.76 0.112914
Target:  5'- cGCCGGGGCCGcgCUaggCGUgACCGUCGg -3'
miRNA:   3'- -CGGCUCCGGCuaGA---GCGgUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 22682 0.75 0.125406
Target:  5'- aCCGccGCCGAUUUCcCCGCCGUCGCc -3'
miRNA:   3'- cGGCucCGGCUAGAGcGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 11439 0.75 0.132122
Target:  5'- uGCUuGGGCCG--CUCGCUGCCGCCGg -3'
miRNA:   3'- -CGGcUCCGGCuaGAGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 6425 0.75 0.132122
Target:  5'- cCCGAccucGCCGAUgUCGgCACCGUCGCg -3'
miRNA:   3'- cGGCUc---CGGCUAgAGCgGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 35479 0.75 0.134549
Target:  5'- cGCCcgguAGGCCGAacgaUCcuggguuggccccgUUGCCGCCGCCGCc -3'
miRNA:   3'- -CGGc---UCCGGCU----AG--------------AGCGGUGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.