miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 425 0.69 0.29995
Target:  5'- cGUCGAGGaugacgcaCCGAUCUaCGUCACgGUgGCa -3'
miRNA:   3'- -CGGCUCC--------GGCUAGA-GCGGUGgCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 1295 0.69 0.29995
Target:  5'- cCCGAGGUCGAgCUCuaCGCgGUCGUg -3'
miRNA:   3'- cGGCUCCGGCUaGAGcgGUGgCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 1357 0.72 0.219569
Target:  5'- uGCCuacuGGGCCG--CUCGCCgcGCCGcCCGCg -3'
miRNA:   3'- -CGGc---UCCGGCuaGAGCGG--UGGC-GGCG- -5'
23220 5' -61.6 NC_005259.1 + 1802 0.67 0.445639
Target:  5'- gGCUGucauGGCCGAcgcgagcaaUCcCGCCGaccugcUCGCCGCu -3'
miRNA:   3'- -CGGCu---CCGGCU---------AGaGCGGU------GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 1850 0.94 0.00493
Target:  5'- cGCCGAGGCCGAgaaaGCCGCCGCCGCg -3'
miRNA:   3'- -CGGCUCCGGCUagagCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 2128 0.68 0.39021
Target:  5'- cGCCGAGGUcacgcagacccgcaCGGUgCUgGCCagcggcgucgaGCCGCCGg -3'
miRNA:   3'- -CGGCUCCG--------------GCUA-GAgCGG-----------UGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 2514 0.7 0.279569
Target:  5'- aGCaCGAGacccaaGCCGA---CGCCACCGCgCGCa -3'
miRNA:   3'- -CG-GCUC------CGGCUagaGCGGUGGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 2944 0.66 0.473535
Target:  5'- uCCaAGGCgcgCGAgaccCUgGCCACCGCgCGCg -3'
miRNA:   3'- cGGcUCCG---GCUa---GAgCGGUGGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 3074 0.69 0.336431
Target:  5'- gGCCGAGGCCGAcaagagaGCCG-CGCaGCg -3'
miRNA:   3'- -CGGCUCCGGCUagag---CGGUgGCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 3857 0.68 0.344105
Target:  5'- cGUCGAcGCCGGUCgagCGCCucgagcccACC-CCGCa -3'
miRNA:   3'- -CGGCUcCGGCUAGa--GCGG--------UGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 4895 0.66 0.502281
Target:  5'- aCCGAGGgUGAUCggaugaGCUGCUuuGCCGUa -3'
miRNA:   3'- cGGCUCCgGCUAGag----CGGUGG--CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 5165 0.66 0.473535
Target:  5'- aCUGAGGggaCCGAccaaugaaacUCUCcgaCGCCGCCGCc -3'
miRNA:   3'- cGGCUCC---GGCU----------AGAGcg-GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 5429 0.73 0.189102
Target:  5'- cGUCGAGGuCUGcgCcCGCUGCCGCCGa -3'
miRNA:   3'- -CGGCUCC-GGCuaGaGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 5494 0.66 0.483027
Target:  5'- cGCCGAGcGagGAUCgagCuaCGCgCGCCGCg -3'
miRNA:   3'- -CGGCUC-CggCUAGa--GcgGUG-GCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 5532 0.72 0.208974
Target:  5'- aGCUGuGGCUGcUCUCGCCcgagGCCGCg -3'
miRNA:   3'- -CGGCuCCGGCuAGAGCGGugg-CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 5723 0.67 0.401276
Target:  5'- cGCCGGacggcGGCCauUCUCGCgGCCaaGCgGCg -3'
miRNA:   3'- -CGGCU-----CCGGcuAGAGCGgUGG--CGgCG- -5'
23220 5' -61.6 NC_005259.1 + 5906 0.69 0.29995
Target:  5'- cGUCGAGGUCGAggugCU-GCgCACCGUCGa -3'
miRNA:   3'- -CGGCUCCGGCUa---GAgCG-GUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 6109 0.82 0.040552
Target:  5'- cGCCGAGGCCGAg---GCCGCCGCuaCGCg -3'
miRNA:   3'- -CGGCUCCGGCUagagCGGUGGCG--GCG- -5'
23220 5' -61.6 NC_005259.1 + 6240 0.68 0.384335
Target:  5'- aCCGugggcgaguGGGUCGAuaUCcCGCacCGCCGCCGCg -3'
miRNA:   3'- cGGC---------UCCGGCU--AGaGCG--GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 6425 0.75 0.132122
Target:  5'- cCCGAccucGCCGAUgUCGgCACCGUCGCg -3'
miRNA:   3'- cGGCUc---CGGCUAgAGCgGUGGCGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.