Results 1 - 20 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 425 | 0.69 | 0.29995 |
Target: 5'- cGUCGAGGaugacgcaCCGAUCUaCGUCACgGUgGCa -3' miRNA: 3'- -CGGCUCC--------GGCUAGA-GCGGUGgCGgCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 1295 | 0.69 | 0.29995 |
Target: 5'- cCCGAGGUCGAgCUCuaCGCgGUCGUg -3' miRNA: 3'- cGGCUCCGGCUaGAGcgGUGgCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 1357 | 0.72 | 0.219569 |
Target: 5'- uGCCuacuGGGCCG--CUCGCCgcGCCGcCCGCg -3' miRNA: 3'- -CGGc---UCCGGCuaGAGCGG--UGGC-GGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 1802 | 0.67 | 0.445639 |
Target: 5'- gGCUGucauGGCCGAcgcgagcaaUCcCGCCGaccugcUCGCCGCu -3' miRNA: 3'- -CGGCu---CCGGCU---------AGaGCGGU------GGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 1850 | 0.94 | 0.00493 |
Target: 5'- cGCCGAGGCCGAgaaaGCCGCCGCCGCg -3' miRNA: 3'- -CGGCUCCGGCUagagCGGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 2128 | 0.68 | 0.39021 |
Target: 5'- cGCCGAGGUcacgcagacccgcaCGGUgCUgGCCagcggcgucgaGCCGCCGg -3' miRNA: 3'- -CGGCUCCG--------------GCUA-GAgCGG-----------UGGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 2514 | 0.7 | 0.279569 |
Target: 5'- aGCaCGAGacccaaGCCGA---CGCCACCGCgCGCa -3' miRNA: 3'- -CG-GCUC------CGGCUagaGCGGUGGCG-GCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 2944 | 0.66 | 0.473535 |
Target: 5'- uCCaAGGCgcgCGAgaccCUgGCCACCGCgCGCg -3' miRNA: 3'- cGGcUCCG---GCUa---GAgCGGUGGCG-GCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 3074 | 0.69 | 0.336431 |
Target: 5'- gGCCGAGGCCGAcaagagaGCCG-CGCaGCg -3' miRNA: 3'- -CGGCUCCGGCUagag---CGGUgGCGgCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 3857 | 0.68 | 0.344105 |
Target: 5'- cGUCGAcGCCGGUCgagCGCCucgagcccACC-CCGCa -3' miRNA: 3'- -CGGCUcCGGCUAGa--GCGG--------UGGcGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 4895 | 0.66 | 0.502281 |
Target: 5'- aCCGAGGgUGAUCggaugaGCUGCUuuGCCGUa -3' miRNA: 3'- cGGCUCCgGCUAGag----CGGUGG--CGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 5165 | 0.66 | 0.473535 |
Target: 5'- aCUGAGGggaCCGAccaaugaaacUCUCcgaCGCCGCCGCc -3' miRNA: 3'- cGGCUCC---GGCU----------AGAGcg-GUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 5429 | 0.73 | 0.189102 |
Target: 5'- cGUCGAGGuCUGcgCcCGCUGCCGCCGa -3' miRNA: 3'- -CGGCUCC-GGCuaGaGCGGUGGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 5494 | 0.66 | 0.483027 |
Target: 5'- cGCCGAGcGagGAUCgagCuaCGCgCGCCGCg -3' miRNA: 3'- -CGGCUC-CggCUAGa--GcgGUG-GCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 5532 | 0.72 | 0.208974 |
Target: 5'- aGCUGuGGCUGcUCUCGCCcgagGCCGCg -3' miRNA: 3'- -CGGCuCCGGCuAGAGCGGugg-CGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 5723 | 0.67 | 0.401276 |
Target: 5'- cGCCGGacggcGGCCauUCUCGCgGCCaaGCgGCg -3' miRNA: 3'- -CGGCU-----CCGGcuAGAGCGgUGG--CGgCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 5906 | 0.69 | 0.29995 |
Target: 5'- cGUCGAGGUCGAggugCU-GCgCACCGUCGa -3' miRNA: 3'- -CGGCUCCGGCUa---GAgCG-GUGGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 6109 | 0.82 | 0.040552 |
Target: 5'- cGCCGAGGCCGAg---GCCGCCGCuaCGCg -3' miRNA: 3'- -CGGCUCCGGCUagagCGGUGGCG--GCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 6240 | 0.68 | 0.384335 |
Target: 5'- aCCGugggcgaguGGGUCGAuaUCcCGCacCGCCGCCGCg -3' miRNA: 3'- cGGC---------UCCGGCU--AGaGCG--GUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 6425 | 0.75 | 0.132122 |
Target: 5'- cCCGAccucGCCGAUgUCGgCACCGUCGCg -3' miRNA: 3'- cGGCUc---CGGCUAgAGCgGUGGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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