Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23221 | 5' | -57.1 | NC_005259.1 | + | 156 | 0.71 | 0.359467 |
Target: 5'- gGGCuCGcCCGGCGGGGUCCGGCa---- -3' miRNA: 3'- -UCGuGU-GGCUGCUCUAGGCCGcucaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 1884 | 0.67 | 0.593146 |
Target: 5'- aAGCAgGCCGcCGAGAUC-GcGCGAGc- -3' miRNA: 3'- -UCGUgUGGCuGCUCUAGgC-CGCUCaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 7032 | 0.66 | 0.689743 |
Target: 5'- gAGCGCcCCGGCGGGGUUuuucguUGcGCGAGa- -3' miRNA: 3'- -UCGUGuGGCUGCUCUAG------GC-CGCUCaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 7175 | 0.68 | 0.550642 |
Target: 5'- gAGgGCACCGGCGAGugcCCGGCc---- -3' miRNA: 3'- -UCgUGUGGCUGCUCua-GGCCGcucaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 8377 | 0.72 | 0.343035 |
Target: 5'- cGGCcucgGCAUCGGCGAGAgccUCGGCGAGc- -3' miRNA: 3'- -UCG----UGUGGCUGCUCUa--GGCCGCUCaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 8620 | 0.73 | 0.275898 |
Target: 5'- uGguCACCG--GAGAUCCGGCGAGa- -3' miRNA: 3'- uCguGUGGCugCUCUAGGCCGCUCaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 10746 | 0.66 | 0.646913 |
Target: 5'- cGCGCGCUGcCGGGcgaucaucauGUCgGGCGGGUc -3' miRNA: 3'- uCGUGUGGCuGCUC----------UAGgCCGCUCAa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 14513 | 0.69 | 0.478856 |
Target: 5'- uGCACACCGGCGAGcacgCGGUGcGUUu -3' miRNA: 3'- uCGUGUGGCUGCUCuag-GCCGCuCAA- -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 14557 | 0.73 | 0.297039 |
Target: 5'- cGGCAgGCCGAgCGGGGaCCGGCGAa-- -3' miRNA: 3'- -UCGUgUGGCU-GCUCUaGGCCGCUcaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 17603 | 0.66 | 0.668393 |
Target: 5'- cGGCGCGauGACGuGGggCGGCGAGg- -3' miRNA: 3'- -UCGUGUggCUGCuCUagGCCGCUCaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 17795 | 0.74 | 0.255977 |
Target: 5'- uGCGCACCGcgauaGCGAGG-CCGGUGAGc- -3' miRNA: 3'- uCGUGUGGC-----UGCUCUaGGCCGCUCaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 23287 | 0.67 | 0.62538 |
Target: 5'- gGGCGCGgUGGuuggguauCGGGGUCCGGCGcGGUc -3' miRNA: 3'- -UCGUGUgGCU--------GCUCUAGGCCGC-UCAa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 23512 | 0.66 | 0.689743 |
Target: 5'- gAGCuCAgCGACGAGAUCucgaCGGUGAa-- -3' miRNA: 3'- -UCGuGUgGCUGCUCUAG----GCCGCUcaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 24076 | 0.68 | 0.561193 |
Target: 5'- cGUGCACCG-CGAGAUcaCCGGCaGGGc- -3' miRNA: 3'- uCGUGUGGCuGCUCUA--GGCCG-CUCaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 25919 | 0.67 | 0.571799 |
Target: 5'- gAGC-CGCCGcCGccGGUCCGGUGAGc- -3' miRNA: 3'- -UCGuGUGGCuGCu-CUAGGCCGCUCaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 26435 | 0.66 | 0.689743 |
Target: 5'- cGCAcCGCCGAgCGGGcgggCCGGUGGGc- -3' miRNA: 3'- uCGU-GUGGCU-GCUCua--GGCCGCUCaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 33802 | 0.76 | 0.178209 |
Target: 5'- gAGguCGCCaucgaucaucguGACGGGGUCCGGCGAGa- -3' miRNA: 3'- -UCguGUGG------------CUGCUCUAGGCCGCUCaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 35683 | 0.69 | 0.498936 |
Target: 5'- uGCACAgCGACGccGUgcCCGGCGAGg- -3' miRNA: 3'- uCGUGUgGCUGCucUA--GGCCGCUCaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 36881 | 0.7 | 0.430499 |
Target: 5'- cGCccGCGCCGACGAcg-CCGGUGAGc- -3' miRNA: 3'- uCG--UGUGGCUGCUcuaGGCCGCUCaa -5' |
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23221 | 5' | -57.1 | NC_005259.1 | + | 43053 | 0.72 | 0.327152 |
Target: 5'- cAGCGaACCGACGGGGUC-GGUGAGg- -3' miRNA: 3'- -UCGUgUGGCUGCUCUAGgCCGCUCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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