miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23223 5' -61.5 NC_005259.1 + 58838 0.66 0.470693
Target:  5'- uCGCCGCcCUcggucucacccucggGCuCGCcGUCGUCGUCGu -3'
miRNA:   3'- -GCGGCGuGA---------------CGcGCGaCAGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 37221 0.66 0.46691
Target:  5'- cCGCCGC-CgGgGCGCUGgcccgUGCCGg-- -3'
miRNA:   3'- -GCGGCGuGaCgCGCGACa----GCGGCagc -5'
23223 5' -61.5 NC_005259.1 + 6447 0.66 0.46691
Target:  5'- cCGUCGCGCUGaucgGCaGC-GUCGCCGg-- -3'
miRNA:   3'- -GCGGCGUGACg---CG-CGaCAGCGGCagc -5'
23223 5' -61.5 NC_005259.1 + 61473 0.66 0.439062
Target:  5'- uGCCGauugacCUGCaCGCUGUCGCgacCGUUGa -3'
miRNA:   3'- gCGGCgu----GACGcGCGACAGCG---GCAGC- -5'
23223 5' -61.5 NC_005259.1 + 14706 0.66 0.439062
Target:  5'- cCGCCGCgACgaacagcacGcCGCGCUcGUCGCCGa-- -3'
miRNA:   3'- -GCGGCG-UGa--------C-GCGCGA-CAGCGGCagc -5'
23223 5' -61.5 NC_005259.1 + 50686 0.66 0.448241
Target:  5'- uGCCG-ACgagGCGCUGcUCGUCGUCGc -3'
miRNA:   3'- gCGGCgUGacgCGCGAC-AGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 50018 0.66 0.457525
Target:  5'- uGCacggGCGCUGCGUaauccGCUGUgGCC-UCGa -3'
miRNA:   3'- gCGg---CGUGACGCG-----CGACAgCGGcAGC- -5'
23223 5' -61.5 NC_005259.1 + 39316 0.66 0.457525
Target:  5'- aCGcCCGCugUcGCGcCGCUGgUGaCCGUCa -3'
miRNA:   3'- -GC-GGCGugA-CGC-GCGACaGC-GGCAGc -5'
23223 5' -61.5 NC_005259.1 + 5421 0.66 0.46691
Target:  5'- gGCCGCcacgucgagguCUGCGCccGCUGcCGCCGa-- -3'
miRNA:   3'- gCGGCGu----------GACGCG--CGACaGCGGCagc -5'
23223 5' -61.5 NC_005259.1 + 26024 0.66 0.46691
Target:  5'- gGCCGCAa-GCGgGUUGgccagcagCGCCGcCGg -3'
miRNA:   3'- gCGGCGUgaCGCgCGACa-------GCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 38189 0.66 0.46691
Target:  5'- uCGCUGUACU-CGUagaccUUGUCGCCGUUGa -3'
miRNA:   3'- -GCGGCGUGAcGCGc----GACAGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 34715 0.66 0.495644
Target:  5'- uGCCGCGCgaGCGC-CUcGUCGgggaaaCCGUUGg -3'
miRNA:   3'- gCGGCGUGa-CGCGcGA-CAGC------GGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.