Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23223 | 5' | -61.5 | NC_005259.1 | + | 26356 | 0.68 | 0.377981 |
Target: 5'- gGCCGaGCUGCGCGUagaUGUCGgUGgCGa -3' miRNA: 3'- gCGGCgUGACGCGCG---ACAGCgGCaGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 38752 | 0.68 | 0.35361 |
Target: 5'- cCGCCGCaggccggugaGCUGCGCGaucaUGUCGgCGa-- -3' miRNA: 3'- -GCGGCG----------UGACGCGCg---ACAGCgGCagc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 42179 | 0.68 | 0.33799 |
Target: 5'- aCGUCGaACUGUaucCGCUGcgCGCCGUCGc -3' miRNA: 3'- -GCGGCgUGACGc--GCGACa-GCGGCAGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 67649 | 0.68 | 0.33799 |
Target: 5'- uGCgGUACaGCGCGCUGUCGgCuUCc -3' miRNA: 3'- gCGgCGUGaCGCGCGACAGCgGcAGc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 45323 | 0.69 | 0.33037 |
Target: 5'- cCGCCGCcgaACUGCGUGgcCUG-CGCCGcCu -3' miRNA: 3'- -GCGGCG---UGACGCGC--GACaGCGGCaGc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 65341 | 0.69 | 0.33037 |
Target: 5'- aGCUGCugUGCGCGggcacGUCGCagGUCa -3' miRNA: 3'- gCGGCGugACGCGCga---CAGCGg-CAGc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 44239 | 0.69 | 0.322878 |
Target: 5'- cCGCCGCGCcgcccGCGCGCgagaaGUCGgCGacaUCGa -3' miRNA: 3'- -GCGGCGUGa----CGCGCGa----CAGCgGC---AGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 10664 | 0.69 | 0.322878 |
Target: 5'- gCGCCuugaggauGguCUGCGcCGCcucuuUGUCGCCGUUGa -3' miRNA: 3'- -GCGG--------CguGACGC-GCG-----ACAGCGGCAGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 58763 | 0.69 | 0.322878 |
Target: 5'- gGCgaaCGaCGCUGCggGCGCUGUgCGCCgGUCGa -3' miRNA: 3'- gCG---GC-GUGACG--CGCGACA-GCGG-CAGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 42810 | 0.69 | 0.315513 |
Target: 5'- gCGCgUGCACUGUGguauUGCUGcCGCCGcCGa -3' miRNA: 3'- -GCG-GCGUGACGC----GCGACaGCGGCaGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 28304 | 0.69 | 0.308276 |
Target: 5'- uGCCGCcCUGCGCaGCguagaucgGUgUGCCGUCc -3' miRNA: 3'- gCGGCGuGACGCG-CGa-------CA-GCGGCAGc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 52030 | 1.09 | 0.000395 |
Target: 5'- cCGCCGCACUGCGCGCUGUCGCCGUCGa -3' miRNA: 3'- -GCGGCGUGACGCGCGACAGCGGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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