miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23223 5' -61.5 NC_005259.1 + 34715 0.66 0.495644
Target:  5'- uGCCGCGCgaGCGC-CUcGUCGgggaaaCCGUUGg -3'
miRNA:   3'- gCGGCGUGa-CGCGcGA-CAGC------GGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 53246 0.7 0.280598
Target:  5'- gCGCCGCcgacaccgucGCcGC-CGCUGUCGCCGg-- -3'
miRNA:   3'- -GCGGCG----------UGaCGcGCGACAGCGGCagc -5'
23223 5' -61.5 NC_005259.1 + 45633 0.69 0.294183
Target:  5'- gGCCGgGCaGCGCGCcggUGcCGCCGUg- -3'
miRNA:   3'- gCGGCgUGaCGCGCG---ACaGCGGCAgc -5'
23223 5' -61.5 NC_005259.1 + 28304 0.69 0.308276
Target:  5'- uGCCGCcCUGCGCaGCguagaucgGUgUGCCGUCc -3'
miRNA:   3'- gCGGCGuGACGCG-CGa-------CA-GCGGCAGc -5'
23223 5' -61.5 NC_005259.1 + 42810 0.69 0.315513
Target:  5'- gCGCgUGCACUGUGguauUGCUGcCGCCGcCGa -3'
miRNA:   3'- -GCG-GCGUGACGC----GCGACaGCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 58763 0.69 0.322878
Target:  5'- gGCgaaCGaCGCUGCggGCGCUGUgCGCCgGUCGa -3'
miRNA:   3'- gCG---GC-GUGACG--CGCGACA-GCGG-CAGC- -5'
23223 5' -61.5 NC_005259.1 + 10664 0.69 0.322878
Target:  5'- gCGCCuugaggauGguCUGCGcCGCcucuuUGUCGCCGUUGa -3'
miRNA:   3'- -GCGG--------CguGACGC-GCG-----ACAGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 44239 0.69 0.322878
Target:  5'- cCGCCGCGCcgcccGCGCGCgagaaGUCGgCGacaUCGa -3'
miRNA:   3'- -GCGGCGUGa----CGCGCGa----CAGCgGC---AGC- -5'
23223 5' -61.5 NC_005259.1 + 65341 0.69 0.33037
Target:  5'- aGCUGCugUGCGCGggcacGUCGCagGUCa -3'
miRNA:   3'- gCGGCGugACGCGCga---CAGCGg-CAGc -5'
23223 5' -61.5 NC_005259.1 + 37357 0.7 0.280598
Target:  5'- uGCCGCugUGCGaguaGCUcaCGCCcUCGg -3'
miRNA:   3'- gCGGCGugACGCg---CGAcaGCGGcAGC- -5'
23223 5' -61.5 NC_005259.1 + 64511 0.7 0.267516
Target:  5'- -uCCGCACgGCGUGCgGUCaGUCGUCa -3'
miRNA:   3'- gcGGCGUGaCGCGCGaCAG-CGGCAGc -5'
23223 5' -61.5 NC_005259.1 + 66025 0.7 0.261791
Target:  5'- gGCCGCACguguUGCGCGCgagcucgacguagacGcCGCCGUgGg -3'
miRNA:   3'- gCGGCGUG----ACGCGCGa--------------CaGCGGCAgC- -5'
23223 5' -61.5 NC_005259.1 + 48521 0.86 0.02068
Target:  5'- uGCCGCACUGCcgacuucucgGCGCUGUCGCCgGUCu -3'
miRNA:   3'- gCGGCGUGACG----------CGCGACAGCGG-CAGc -5'
23223 5' -61.5 NC_005259.1 + 6355 0.77 0.091073
Target:  5'- uGCCGUACgUGCGCacGUUGUCGCCGggcgCGa -3'
miRNA:   3'- gCGGCGUG-ACGCG--CGACAGCGGCa---GC- -5'
23223 5' -61.5 NC_005259.1 + 40559 0.74 0.154336
Target:  5'- aCGCgCGC-CcGCGCGgUGUUGCUGUCGg -3'
miRNA:   3'- -GCG-GCGuGaCGCGCgACAGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 45401 0.72 0.214683
Target:  5'- uCGCCGC-CgaGCGCGCUGaUgGCCGcCGc -3'
miRNA:   3'- -GCGGCGuGa-CGCGCGAC-AgCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 30698 0.71 0.225593
Target:  5'- gGCaGCACgaGCGUGUUGUUGCCGcCGa -3'
miRNA:   3'- gCGgCGUGa-CGCGCGACAGCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 36853 0.71 0.231222
Target:  5'- aCGCCGCccGCUGCGCcguuGCUGgcaccgcccgCGCCGaCGa -3'
miRNA:   3'- -GCGGCG--UGACGCG----CGACa---------GCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 11314 0.7 0.261162
Target:  5'- gGCCGagACggGCGCGCaGcUCGUCGUCGg -3'
miRNA:   3'- gCGGCg-UGa-CGCGCGaC-AGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 58468 0.7 0.261162
Target:  5'- gGCCacCAgUGCGUgGCUGUCGCCGaCGa -3'
miRNA:   3'- gCGGc-GUgACGCG-CGACAGCGGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.