miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23223 5' -61.5 NC_005259.1 + 62638 0.67 0.429991
Target:  5'- -aCCGCAUUGCGUaGCUucUCGuuGUCGa -3'
miRNA:   3'- gcGGCGUGACGCG-CGAc-AGCggCAGC- -5'
23223 5' -61.5 NC_005259.1 + 23893 0.67 0.429991
Target:  5'- uGCCGCccgaGCcGcCGCGCc--CGCCGUCGa -3'
miRNA:   3'- gCGGCG----UGaC-GCGCGacaGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 14331 0.67 0.421032
Target:  5'- cCGCCGC-CcGCGUGCggGcCGCCGaCGc -3'
miRNA:   3'- -GCGGCGuGaCGCGCGa-CaGCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 5518 0.67 0.421032
Target:  5'- gCGCCGCGCccGCaaGCUGUgGCUGcUCu -3'
miRNA:   3'- -GCGGCGUGa-CGcgCGACAgCGGC-AGc -5'
23223 5' -61.5 NC_005259.1 + 22668 0.67 0.411308
Target:  5'- uCGCCgacGCACUGacCGCcgccgauuuccccGCcGUCGCCGUCa -3'
miRNA:   3'- -GCGG---CGUGAC--GCG-------------CGaCAGCGGCAGc -5'
23223 5' -61.5 NC_005259.1 + 62940 0.67 0.386352
Target:  5'- gGCuCGCGCUGCuGCcgggcaccGCUGUCcUCGUCGu -3'
miRNA:   3'- gCG-GCGUGACG-CG--------CGACAGcGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 26356 0.68 0.377981
Target:  5'- gGCCGaGCUGCGCGUagaUGUCGgUGgCGa -3'
miRNA:   3'- gCGGCgUGACGCGCG---ACAGCgGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 31565 0.68 0.377981
Target:  5'- cCGCUGCACcGCGC-CUGaUCGUCGcCa -3'
miRNA:   3'- -GCGGCGUGaCGCGcGAC-AGCGGCaGc -5'
23223 5' -61.5 NC_005259.1 + 38752 0.68 0.35361
Target:  5'- cCGCCGCaggccggugaGCUGCGCGaucaUGUCGgCGa-- -3'
miRNA:   3'- -GCGGCG----------UGACGCGCg---ACAGCgGCagc -5'
23223 5' -61.5 NC_005259.1 + 67649 0.68 0.33799
Target:  5'- uGCgGUACaGCGCGCUGUCGgCuUCc -3'
miRNA:   3'- gCGgCGUGaCGCGCGACAGCgGcAGc -5'
23223 5' -61.5 NC_005259.1 + 42179 0.68 0.33799
Target:  5'- aCGUCGaACUGUaucCGCUGcgCGCCGUCGc -3'
miRNA:   3'- -GCGGCgUGACGc--GCGACa-GCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 45323 0.69 0.33037
Target:  5'- cCGCCGCcgaACUGCGUGgcCUG-CGCCGcCu -3'
miRNA:   3'- -GCGGCG---UGACGCGC--GACaGCGGCaGc -5'
23223 5' -61.5 NC_005259.1 + 65341 0.69 0.33037
Target:  5'- aGCUGCugUGCGCGggcacGUCGCagGUCa -3'
miRNA:   3'- gCGGCGugACGCGCga---CAGCGg-CAGc -5'
23223 5' -61.5 NC_005259.1 + 44239 0.69 0.322878
Target:  5'- cCGCCGCGCcgcccGCGCGCgagaaGUCGgCGacaUCGa -3'
miRNA:   3'- -GCGGCGUGa----CGCGCGa----CAGCgGC---AGC- -5'
23223 5' -61.5 NC_005259.1 + 58763 0.69 0.322878
Target:  5'- gGCgaaCGaCGCUGCggGCGCUGUgCGCCgGUCGa -3'
miRNA:   3'- gCG---GC-GUGACG--CGCGACA-GCGG-CAGC- -5'
23223 5' -61.5 NC_005259.1 + 10664 0.69 0.322878
Target:  5'- gCGCCuugaggauGguCUGCGcCGCcucuuUGUCGCCGUUGa -3'
miRNA:   3'- -GCGG--------CguGACGC-GCG-----ACAGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 42810 0.69 0.315513
Target:  5'- gCGCgUGCACUGUGguauUGCUGcCGCCGcCGa -3'
miRNA:   3'- -GCG-GCGUGACGC----GCGACaGCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 28304 0.69 0.308276
Target:  5'- uGCCGCcCUGCGCaGCguagaucgGUgUGCCGUCc -3'
miRNA:   3'- gCGGCGuGACGCG-CGa-------CA-GCGGCAGc -5'
23223 5' -61.5 NC_005259.1 + 45633 0.69 0.294183
Target:  5'- gGCCGgGCaGCGCGCcggUGcCGCCGUg- -3'
miRNA:   3'- gCGGCgUGaCGCGCG---ACaGCGGCAgc -5'
23223 5' -61.5 NC_005259.1 + 53246 0.7 0.280598
Target:  5'- gCGCCGCcgacaccgucGCcGC-CGCUGUCGCCGg-- -3'
miRNA:   3'- -GCGGCG----------UGaCGcGCGACAGCGGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.