miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23224 3' -59.5 NC_005259.1 + 1354 0.66 0.502729
Target:  5'- -cGGUGCCuacUGGGCCGCucgccgcgccGCCCGCGa -3'
miRNA:   3'- uaUCGCGGcguACUCGGCG----------UGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 1562 0.68 0.406399
Target:  5'- -gGGCGgugaCGCuGUGAGCgCGC-CCCACAc -3'
miRNA:   3'- uaUCGCg---GCG-UACUCG-GCGuGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 4641 0.66 0.512927
Target:  5'- gAUAGUGcCCGCGca--CCGCGCCUACGg -3'
miRNA:   3'- -UAUCGC-GGCGUacucGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 5343 0.67 0.424748
Target:  5'- gGUGGUGagauuCGCAUGAGCCG-ACCUAUc -3'
miRNA:   3'- -UAUCGCg----GCGUACUCGGCgUGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 5489 0.76 0.110514
Target:  5'- aAUAGCGCCGagcgagGAucgagcuacgcgcGCCGCGCCCGCAa -3'
miRNA:   3'- -UAUCGCGGCgua---CU-------------CGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 6463 0.71 0.245951
Target:  5'- -cAGCGUCGCcgGuGCCcuGUACCCGCu -3'
miRNA:   3'- uaUCGCGGCGuaCuCGG--CGUGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 7439 0.67 0.415512
Target:  5'- --cGCGCCGCAUG-GCaGCGCCgAgGa -3'
miRNA:   3'- uauCGCGGCGUACuCGgCGUGGgUgU- -5'
23224 3' -59.5 NC_005259.1 + 7906 0.68 0.396522
Target:  5'- gAUAGCgcaccaccuuGCCGCccuuggucucGUGGGCCuucuugcGCGCCCACGg -3'
miRNA:   3'- -UAUCG----------CGGCG----------UACUCGG-------CGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 8566 0.67 0.424748
Target:  5'- --uGCGCCGCAgca-CCGCcaccGCCCACGc -3'
miRNA:   3'- uauCGCGGCGUacucGGCG----UGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 8775 0.66 0.502729
Target:  5'- -cAGCGCgGCGgugaUGAGCUcgGCCCGCu -3'
miRNA:   3'- uaUCGCGgCGU----ACUCGGcgUGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 8867 0.72 0.205516
Target:  5'- ---cCGCCGCcu--GCCGCACCCACGc -3'
miRNA:   3'- uaucGCGGCGuacuCGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 11525 0.7 0.292766
Target:  5'- -cGGCGgCaGCGaucuUGAGCCGUugCCGCAc -3'
miRNA:   3'- uaUCGCgG-CGU----ACUCGGCGugGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 13425 0.73 0.175562
Target:  5'- -gGGuCGCCGCcgGGGCCGCGCUagGCGu -3'
miRNA:   3'- uaUC-GCGGCGuaCUCGGCGUGGg-UGU- -5'
23224 3' -59.5 NC_005259.1 + 14874 0.66 0.482605
Target:  5'- --cGCGCUGCccGAGCCGcCGCCg--- -3'
miRNA:   3'- uauCGCGGCGuaCUCGGC-GUGGgugu -5'
23224 3' -59.5 NC_005259.1 + 15595 0.67 0.415512
Target:  5'- --cGgGCCGCAUGAGCUacgGCAgCCC-CGa -3'
miRNA:   3'- uauCgCGGCGUACUCGG---CGU-GGGuGU- -5'
23224 3' -59.5 NC_005259.1 + 18791 0.66 0.502729
Target:  5'- -aAGCgGUgGCAggGAcGCCGCACCCuCAa -3'
miRNA:   3'- uaUCG-CGgCGUa-CU-CGGCGUGGGuGU- -5'
23224 3' -59.5 NC_005259.1 + 19869 0.68 0.388556
Target:  5'- --cGCGcCCGCcgGGaucgccgacGCCGCGCCCAa- -3'
miRNA:   3'- uauCGC-GGCGuaCU---------CGGCGUGGGUgu -5'
23224 3' -59.5 NC_005259.1 + 23890 0.73 0.190021
Target:  5'- --cGCuGCCGCccGAGCCGCcgcGCCCGCc -3'
miRNA:   3'- uauCG-CGGCGuaCUCGGCG---UGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 24813 0.67 0.462878
Target:  5'- -aGGUGCCccgGCAc--GCCGUGCCCGCAc -3'
miRNA:   3'- uaUCGCGG---CGUacuCGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 25075 0.72 0.222093
Target:  5'- gGUGGCGCUGCcaccgccGCUGCGCCCGCc -3'
miRNA:   3'- -UAUCGCGGCGuacu---CGGCGUGGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.