miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23224 3' -59.5 NC_005259.1 + 47995 0.68 0.406399
Target:  5'- -cAGCGCaagaccggcuUGUGUGAGCugcugcacCGCGCCCACGa -3'
miRNA:   3'- uaUCGCG----------GCGUACUCG--------GCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 1562 0.68 0.406399
Target:  5'- -gGGCGgugaCGCuGUGAGCgCGC-CCCACAc -3'
miRNA:   3'- uaUCGCg---GCG-UACUCG-GCGuGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 44330 0.68 0.397413
Target:  5'- -gAGCGCCGCGU-AGCUGCcgggcuuguUCCACGg -3'
miRNA:   3'- uaUCGCGGCGUAcUCGGCGu--------GGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 38799 0.68 0.397413
Target:  5'- --cGCuGCCG-AUGAGaucgcCCGCGCCCGCGa -3'
miRNA:   3'- uauCG-CGGCgUACUC-----GGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 7906 0.68 0.396522
Target:  5'- gAUAGCgcaccaccuuGCCGCccuuggucucGUGGGCCuucuugcGCGCCCACGg -3'
miRNA:   3'- -UAUCG----------CGGCG----------UACUCGG-------CGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 19869 0.68 0.388556
Target:  5'- --cGCGcCCGCcgGGaucgccgacGCCGCGCCCAa- -3'
miRNA:   3'- uauCGC-GGCGuaCU---------CGGCGUGGGUgu -5'
23224 3' -59.5 NC_005259.1 + 49881 0.68 0.361936
Target:  5'- --uGCGCCgaguugcGCAUGAagGUCGUGCCCGCGu -3'
miRNA:   3'- uauCGCGG-------CGUACU--CGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 39853 0.69 0.354448
Target:  5'- -aGGaUGCCGgugagcuucuCAUaGAGCUGCGCCCACAc -3'
miRNA:   3'- uaUC-GCGGC----------GUA-CUCGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 47955 0.69 0.354448
Target:  5'- -cGGUGCCG-AUGGccGCCGCgccGCCCGCGa -3'
miRNA:   3'- uaUCGCGGCgUACU--CGGCG---UGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 63176 0.69 0.346258
Target:  5'- -cAGCGCCGCcgagGUGA-UCGCACCC-CGg -3'
miRNA:   3'- uaUCGCGGCG----UACUcGGCGUGGGuGU- -5'
23224 3' -59.5 NC_005259.1 + 50913 1.06 0.000665
Target:  5'- gAUAGCGCCGCAUGAGCCGCACCCACAc -3'
miRNA:   3'- -UAUCGCGGCGUACUCGGCGUGGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.