miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23224 5' -55.7 NC_005259.1 + 50949 1.07 0.001362
Target:  5'- cGUUGCAUCCUUGGCUCGCGUGGCUGUc -3'
miRNA:   3'- -CAACGUAGGAACCGAGCGCACCGACA- -5'
23224 5' -55.7 NC_005259.1 + 58450 0.67 0.624521
Target:  5'- --gGUggCCUUGGUgaucgcggccaccagUGCGUGGCUGUc -3'
miRNA:   3'- caaCGuaGGAACCGa--------------GCGCACCGACA- -5'
23224 5' -55.7 NC_005259.1 + 36779 0.67 0.656385
Target:  5'- cGUUGCcgccGUCCUgaccGCUCGCGUcGGCa-- -3'
miRNA:   3'- -CAACG----UAGGAac--CGAGCGCA-CCGaca -5'
23224 5' -55.7 NC_005259.1 + 3263 0.66 0.732006
Target:  5'- --gGCAUCCU--GCUCGgGUGGUUu- -3'
miRNA:   3'- caaCGUAGGAacCGAGCgCACCGAca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.