Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 50522 | 1.11 | 0.000258 |
Target: 5'- cUGCACCUCGACGCGCUCGCCUCGGGCg -3' miRNA: 3'- -ACGUGGAGCUGCGCGAGCGGAGCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 29830 | 0.79 | 0.059161 |
Target: 5'- aGCGCCUCGGCaugaaauccguuCGCUCGCUgUCGGGCa -3' miRNA: 3'- aCGUGGAGCUGc-----------GCGAGCGG-AGCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 14320 | 0.76 | 0.113658 |
Target: 5'- cGC-CCUCGACGcCGC-CGCCcgcgugCGGGCc -3' miRNA: 3'- aCGuGGAGCUGC-GCGaGCGGa-----GCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 45733 | 0.75 | 0.133152 |
Target: 5'- cGCACCacCGAggcCGCGCacCGCCUCGGGg -3' miRNA: 3'- aCGUGGa-GCU---GCGCGa-GCGGAGCCCg -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 55037 | 0.74 | 0.140308 |
Target: 5'- gGCugC-CGAgGUGCUUGCCUCGGugGCa -3' miRNA: 3'- aCGugGaGCUgCGCGAGCGGAGCC--CG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 36230 | 0.74 | 0.144016 |
Target: 5'- aGCACCUUGGCcaGCGCgagCGCCUgCGucGGCa -3' miRNA: 3'- aCGUGGAGCUG--CGCGa--GCGGA-GC--CCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 52393 | 0.74 | 0.146665 |
Target: 5'- aGCcuGCCUCGggccaucgagguguGgGCGCUCGaCUCGGGCg -3' miRNA: 3'- aCG--UGGAGC--------------UgCGCGAGCgGAGCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 63206 | 0.73 | 0.17213 |
Target: 5'- gUGCGCCUCGAcCGC-CUCGUCagacagaUCGGGg -3' miRNA: 3'- -ACGUGGAGCU-GCGcGAGCGG-------AGCCCg -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 64773 | 0.73 | 0.17213 |
Target: 5'- gUGCGCCUCGGCGgccCGCUgcgacuggcugugUGCCUCGGccucgGCg -3' miRNA: 3'- -ACGUGGAGCUGC---GCGA-------------GCGGAGCC-----CG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 48490 | 0.73 | 0.172572 |
Target: 5'- cUGUuCCUCGACGCGCUUGa---GGGCc -3' miRNA: 3'- -ACGuGGAGCUGCGCGAGCggagCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 58831 | 0.73 | 0.181153 |
Target: 5'- gGCAcCCUCGcCGCcCUCGgucucacCCUCGGGCu -3' miRNA: 3'- aCGU-GGAGCuGCGcGAGC-------GGAGCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 34377 | 0.72 | 0.195965 |
Target: 5'- cGCguaACCUCGACGCGCaacUGCUgcucgacCGGGCu -3' miRNA: 3'- aCG---UGGAGCUGCGCGa--GCGGa------GCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 68415 | 0.72 | 0.195965 |
Target: 5'- cGUagACCUUGACGC-CUCGCg-CGGGCc -3' miRNA: 3'- aCG--UGGAGCUGCGcGAGCGgaGCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 17740 | 0.72 | 0.210242 |
Target: 5'- gGCugCUCGACGCGauccgugaggcCGCCgcgcgcCGGGCc -3' miRNA: 3'- aCGugGAGCUGCGCga---------GCGGa-----GCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 31664 | 0.71 | 0.222081 |
Target: 5'- cUGCuugACCUCGACGgGgUUGCC-CGaGGCa -3' miRNA: 3'- -ACG---UGGAGCUGCgCgAGCGGaGC-CCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 34889 | 0.71 | 0.229907 |
Target: 5'- gGUGCCUCGggcaggacggGC-CGCUCgggcaucacacugcuGCCUCGGGCg -3' miRNA: 3'- aCGUGGAGC----------UGcGCGAG---------------CGGAGCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 19190 | 0.71 | 0.233332 |
Target: 5'- gUGC-CCUCGACaGCgaGCUCGUggugCGGGCg -3' miRNA: 3'- -ACGuGGAGCUG-CG--CGAGCGga--GCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 3852 | 0.71 | 0.233332 |
Target: 5'- cGCACCgUCGACGC-CggucgagCGCCUCGaGCc -3' miRNA: 3'- aCGUGG-AGCUGCGcGa------GCGGAGCcCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 24266 | 0.71 | 0.239135 |
Target: 5'- gUGCACgcguggCUgGAaGCGCUCGaCCUCGGGa -3' miRNA: 3'- -ACGUG------GAgCUgCGCGAGC-GGAGCCCg -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 65789 | 0.71 | 0.239135 |
Target: 5'- cGCcaugGCCUCGACGCGCUgGUCgaaacgCuGGCc -3' miRNA: 3'- aCG----UGGAGCUGCGCGAgCGGa-----GcCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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