miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23225 5' -61.4 NC_005259.1 + 502 0.67 0.433831
Target:  5'- cGCugCUCGACggcauguucgauGCGCagUCGgaCUaCGGGCa -3'
miRNA:   3'- aCGugGAGCUG------------CGCG--AGCg-GA-GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 2630 0.66 0.490189
Target:  5'- cGCACCUCGcCGaacaaggGCggUGUCgCGGGCa -3'
miRNA:   3'- aCGUGGAGCuGCg------CGa-GCGGaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 3313 0.66 0.48055
Target:  5'- aGCGCUgcgUCGACGUGagCGCC--GGGCa -3'
miRNA:   3'- aCGUGG---AGCUGCGCgaGCGGagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 3852 0.71 0.233332
Target:  5'- cGCACCgUCGACGC-CggucgagCGCCUCGaGCc -3'
miRNA:   3'- aCGUGG-AGCUGCGcGa------GCGGAGCcCG- -5'
23225 5' -61.4 NC_005259.1 + 6934 0.66 0.490189
Target:  5'- cGcCGCCUUGAgGCcgaGCUCGCCgcCGacGGCa -3'
miRNA:   3'- aC-GUGGAGCUgCG---CGAGCGGa-GC--CCG- -5'
23225 5' -61.4 NC_005259.1 + 7861 0.67 0.424805
Target:  5'- cGCGCCgaccccggUGGCccgaGUGCUUGgaCUCGGGCa -3'
miRNA:   3'- aCGUGGa-------GCUG----CGCGAGCg-GAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 9509 0.67 0.415893
Target:  5'- gUGCGCUcgUCG-CGCGCgucgacCGCCgcCGGGUc -3'
miRNA:   3'- -ACGUGG--AGCuGCGCGa-----GCGGa-GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 10328 0.68 0.381419
Target:  5'- cGgGCUcggCGACGgGCUCGgCggcagCGGGCu -3'
miRNA:   3'- aCgUGGa--GCUGCgCGAGCgGa----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 10558 0.67 0.424805
Target:  5'- aUGUG-CUCGAucaauCGCGC-CGCCUCGacGGCg -3'
miRNA:   3'- -ACGUgGAGCU-----GCGCGaGCGGAGC--CCG- -5'
23225 5' -61.4 NC_005259.1 + 11011 0.67 0.415893
Target:  5'- cGCGCCg-GACGCGCcgaggcaggaguUCGCC--GGGUg -3'
miRNA:   3'- aCGUGGagCUGCGCG------------AGCGGagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 12212 0.67 0.433831
Target:  5'- aUGCACCggCGcAC-CGCcCGCUggcCGGGCa -3'
miRNA:   3'- -ACGUGGa-GC-UGcGCGaGCGGa--GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 12297 0.68 0.364912
Target:  5'- cGCGCCUCGAUGCGg--GCaaugUCGGuGCg -3'
miRNA:   3'- aCGUGGAGCUGCGCgagCGg---AGCC-CG- -5'
23225 5' -61.4 NC_005259.1 + 12981 0.69 0.311113
Target:  5'- aGCGCCcacCGugGUGCUCGCgUUCGcacucGGCu -3'
miRNA:   3'- aCGUGGa--GCugCGCGAGCG-GAGC-----CCG- -5'
23225 5' -61.4 NC_005259.1 + 14157 0.67 0.407096
Target:  5'- aGCGCgUCG-UGUGgauCUCGCCgggCGGGUg -3'
miRNA:   3'- aCGUGgAGCuGCGC---GAGCGGa--GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 14221 0.68 0.341091
Target:  5'- -cUACC-CGGCGCGCgUCGUgcguaUCGGGCc -3'
miRNA:   3'- acGUGGaGCUGCGCG-AGCGg----AGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 14320 0.76 0.113658
Target:  5'- cGC-CCUCGACGcCGC-CGCCcgcgugCGGGCc -3'
miRNA:   3'- aCGuGGAGCUGC-GCGaGCGGa-----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 15198 0.68 0.381419
Target:  5'- gUGCACCgcaugaugcUGugGCGCUCGgCgCUCGG-Ca -3'
miRNA:   3'- -ACGUGGa--------GCugCGCGAGC-G-GAGCCcG- -5'
23225 5' -61.4 NC_005259.1 + 15843 0.67 0.397556
Target:  5'- aUGUACggCUCGGgcauCGCcaaGCUCGCCgcucucaUCGGGCa -3'
miRNA:   3'- -ACGUG--GAGCU----GCG---CGAGCGG-------AGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 16494 0.67 0.415893
Target:  5'- cGCACC-CG-CGCGCaUgGCCgagagCGaGGCg -3'
miRNA:   3'- aCGUGGaGCuGCGCG-AgCGGa----GC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 16635 0.66 0.479591
Target:  5'- gGcCACCUaCGGCGaCGC-CGCCgacaauuUCGGGg -3'
miRNA:   3'- aC-GUGGA-GCUGC-GCGaGCGG-------AGCCCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.