Results 1 - 20 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 502 | 0.67 | 0.433831 |
Target: 5'- cGCugCUCGACggcauguucgauGCGCagUCGgaCUaCGGGCa -3' miRNA: 3'- aCGugGAGCUG------------CGCG--AGCg-GA-GCCCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 2630 | 0.66 | 0.490189 |
Target: 5'- cGCACCUCGcCGaacaaggGCggUGUCgCGGGCa -3' miRNA: 3'- aCGUGGAGCuGCg------CGa-GCGGaGCCCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 3313 | 0.66 | 0.48055 |
Target: 5'- aGCGCUgcgUCGACGUGagCGCC--GGGCa -3' miRNA: 3'- aCGUGG---AGCUGCGCgaGCGGagCCCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 3852 | 0.71 | 0.233332 |
Target: 5'- cGCACCgUCGACGC-CggucgagCGCCUCGaGCc -3' miRNA: 3'- aCGUGG-AGCUGCGcGa------GCGGAGCcCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 6934 | 0.66 | 0.490189 |
Target: 5'- cGcCGCCUUGAgGCcgaGCUCGCCgcCGacGGCa -3' miRNA: 3'- aC-GUGGAGCUgCG---CGAGCGGa-GC--CCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 7861 | 0.67 | 0.424805 |
Target: 5'- cGCGCCgaccccggUGGCccgaGUGCUUGgaCUCGGGCa -3' miRNA: 3'- aCGUGGa-------GCUG----CGCGAGCg-GAGCCCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 9509 | 0.67 | 0.415893 |
Target: 5'- gUGCGCUcgUCG-CGCGCgucgacCGCCgcCGGGUc -3' miRNA: 3'- -ACGUGG--AGCuGCGCGa-----GCGGa-GCCCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 10328 | 0.68 | 0.381419 |
Target: 5'- cGgGCUcggCGACGgGCUCGgCggcagCGGGCu -3' miRNA: 3'- aCgUGGa--GCUGCgCGAGCgGa----GCCCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 10558 | 0.67 | 0.424805 |
Target: 5'- aUGUG-CUCGAucaauCGCGC-CGCCUCGacGGCg -3' miRNA: 3'- -ACGUgGAGCU-----GCGCGaGCGGAGC--CCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 11011 | 0.67 | 0.415893 |
Target: 5'- cGCGCCg-GACGCGCcgaggcaggaguUCGCC--GGGUg -3' miRNA: 3'- aCGUGGagCUGCGCG------------AGCGGagCCCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 12212 | 0.67 | 0.433831 |
Target: 5'- aUGCACCggCGcAC-CGCcCGCUggcCGGGCa -3' miRNA: 3'- -ACGUGGa-GC-UGcGCGaGCGGa--GCCCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 12297 | 0.68 | 0.364912 |
Target: 5'- cGCGCCUCGAUGCGg--GCaaugUCGGuGCg -3' miRNA: 3'- aCGUGGAGCUGCGCgagCGg---AGCC-CG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 12981 | 0.69 | 0.311113 |
Target: 5'- aGCGCCcacCGugGUGCUCGCgUUCGcacucGGCu -3' miRNA: 3'- aCGUGGa--GCugCGCGAGCG-GAGC-----CCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 14157 | 0.67 | 0.407096 |
Target: 5'- aGCGCgUCG-UGUGgauCUCGCCgggCGGGUg -3' miRNA: 3'- aCGUGgAGCuGCGC---GAGCGGa--GCCCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 14221 | 0.68 | 0.341091 |
Target: 5'- -cUACC-CGGCGCGCgUCGUgcguaUCGGGCc -3' miRNA: 3'- acGUGGaGCUGCGCG-AGCGg----AGCCCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 14320 | 0.76 | 0.113658 |
Target: 5'- cGC-CCUCGACGcCGC-CGCCcgcgugCGGGCc -3' miRNA: 3'- aCGuGGAGCUGC-GCGaGCGGa-----GCCCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 15198 | 0.68 | 0.381419 |
Target: 5'- gUGCACCgcaugaugcUGugGCGCUCGgCgCUCGG-Ca -3' miRNA: 3'- -ACGUGGa--------GCugCGCGAGC-G-GAGCCcG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 15843 | 0.67 | 0.397556 |
Target: 5'- aUGUACggCUCGGgcauCGCcaaGCUCGCCgcucucaUCGGGCa -3' miRNA: 3'- -ACGUG--GAGCU----GCG---CGAGCGG-------AGCCCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 16494 | 0.67 | 0.415893 |
Target: 5'- cGCACC-CG-CGCGCaUgGCCgagagCGaGGCg -3' miRNA: 3'- aCGUGGaGCuGCGCG-AgCGGa----GC-CCG- -5' |
|||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 16635 | 0.66 | 0.479591 |
Target: 5'- gGcCACCUaCGGCGaCGC-CGCCgacaauuUCGGGg -3' miRNA: 3'- aC-GUGGA-GCUGC-GCGaGCGG-------AGCCCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home