miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23225 5' -61.4 NC_005259.1 + 16494 0.67 0.415893
Target:  5'- cGCACC-CG-CGCGCaUgGCCgagagCGaGGCg -3'
miRNA:   3'- aCGUGGaGCuGCGCG-AgCGGa----GC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 63648 0.67 0.415893
Target:  5'- aGCugCUCgcuggccggGACGcCGgaCaCCUCGGGCa -3'
miRNA:   3'- aCGugGAG---------CUGC-GCgaGcGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 9509 0.67 0.415893
Target:  5'- gUGCGCUcgUCG-CGCGCgucgacCGCCgcCGGGUc -3'
miRNA:   3'- -ACGUGG--AGCuGCGCGa-----GCGGa-GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 14157 0.67 0.407096
Target:  5'- aGCGCgUCG-UGUGgauCUCGCCgggCGGGUg -3'
miRNA:   3'- aCGUGgAGCuGCGC---GAGCGGa--GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 61928 0.67 0.407096
Target:  5'- gGCAgCUCGGucucuCGCGCgggUGCCg-GGGCc -3'
miRNA:   3'- aCGUgGAGCU-----GCGCGa--GCGGagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 61854 0.67 0.398417
Target:  5'- aGCACCUCGGC-CaC-CGCCUCGcGuGCc -3'
miRNA:   3'- aCGUGGAGCUGcGcGaGCGGAGC-C-CG- -5'
23225 5' -61.4 NC_005259.1 + 66242 0.67 0.398417
Target:  5'- gUGCAgCCaUCGACGCaGCgcgGCCcgcgcCGGGCg -3'
miRNA:   3'- -ACGU-GG-AGCUGCG-CGag-CGGa----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 51659 0.67 0.398417
Target:  5'- gGUugC-CG-CGCGggCGCgUCGGGCa -3'
miRNA:   3'- aCGugGaGCuGCGCgaGCGgAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 27505 0.67 0.398417
Target:  5'- cGCGCCgaggUCGACGUGUccgcacaCGCCgUCGaGGCc -3'
miRNA:   3'- aCGUGG----AGCUGCGCGa------GCGG-AGC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 15843 0.67 0.397556
Target:  5'- aUGUACggCUCGGgcauCGCcaaGCUCGCCgcucucaUCGGGCa -3'
miRNA:   3'- -ACGUG--GAGCU----GCG---CGAGCGG-------AGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 59390 0.67 0.389857
Target:  5'- cGUGCCUCcGCGCGCgagcgUGaCCUCGcGCa -3'
miRNA:   3'- aCGUGGAGcUGCGCGa----GC-GGAGCcCG- -5'
23225 5' -61.4 NC_005259.1 + 19851 0.67 0.389857
Target:  5'- cGCGCUcggUGugGCGCUCGCgCccgcCGGGa -3'
miRNA:   3'- aCGUGGa--GCugCGCGAGCG-Ga---GCCCg -5'
23225 5' -61.4 NC_005259.1 + 47912 0.67 0.389857
Target:  5'- aGCGCCUUGAUG-GCgUCGCCga-GGCc -3'
miRNA:   3'- aCGUGGAGCUGCgCG-AGCGGagcCCG- -5'
23225 5' -61.4 NC_005259.1 + 16673 0.67 0.389857
Target:  5'- -cCGCCUCGAUGUGgUCGgCgauccUGGGCa -3'
miRNA:   3'- acGUGGAGCUGCGCgAGCgGa----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 35249 0.67 0.389857
Target:  5'- cUGCGCaCUCGcguuguuCGCGCcCGCCgcgcCGGGg -3'
miRNA:   3'- -ACGUG-GAGCu------GCGCGaGCGGa---GCCCg -5'
23225 5' -61.4 NC_005259.1 + 57503 0.67 0.389857
Target:  5'- cGuCACCUUGACcgacucaccgcaGCGCUUGCCgacGGCg -3'
miRNA:   3'- aC-GUGGAGCUG------------CGCGAGCGGagcCCG- -5'
23225 5' -61.4 NC_005259.1 + 45602 0.68 0.381419
Target:  5'- aGCACCgacagcucggucUCGAUGC-C-CGCCgggcCGGGCa -3'
miRNA:   3'- aCGUGG------------AGCUGCGcGaGCGGa---GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 10328 0.68 0.381419
Target:  5'- cGgGCUcggCGACGgGCUCGgCggcagCGGGCu -3'
miRNA:   3'- aCgUGGa--GCUGCgCGAGCgGa----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 62922 0.68 0.381419
Target:  5'- cGCucguCCUCGGuuUGCgGCUCGCgCUgcugcCGGGCa -3'
miRNA:   3'- aCGu---GGAGCU--GCG-CGAGCG-GA-----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 32868 0.68 0.381419
Target:  5'- --gACCUCGACGCGCgCGgugaucgauucaCCggGGGCg -3'
miRNA:   3'- acgUGGAGCUGCGCGaGC------------GGagCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.