miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23227 3' -52.1 NC_005259.1 + 4155 0.66 0.932645
Target:  5'- aAGGAcgCGaUGGUCACGAUGgucaCGcUGCu -3'
miRNA:   3'- cUCCUa-GCaACCAGUGCUGC----GCaACG- -5'
23227 3' -52.1 NC_005259.1 + 55177 0.66 0.932645
Target:  5'- ------aGUcGGUCACGAC-CGUUGCg -3'
miRNA:   3'- cuccuagCAaCCAGUGCUGcGCAACG- -5'
23227 3' -52.1 NC_005259.1 + 67918 0.66 0.921233
Target:  5'- cGAGGucaagcgCGUaGGUCGCGAggaugaucuUGCGgUGCg -3'
miRNA:   3'- -CUCCua-----GCAaCCAGUGCU---------GCGCaACG- -5'
23227 3' -52.1 NC_005259.1 + 58017 0.66 0.915114
Target:  5'- uGAGGAUCGUccGGcgagaCAgGGCGCGgaagUGUu -3'
miRNA:   3'- -CUCCUAGCAa-CCa----GUgCUGCGCa---ACG- -5'
23227 3' -52.1 NC_005259.1 + 57914 0.66 0.90872
Target:  5'- -cGGAU-GUUGGUCGCGACcag-UGCc -3'
miRNA:   3'- cuCCUAgCAACCAGUGCUGcgcaACG- -5'
23227 3' -52.1 NC_005259.1 + 32573 0.68 0.839473
Target:  5'- cGGGGAUagCGUUGGgcaGCGguuuACGCGcgUGCa -3'
miRNA:   3'- -CUCCUA--GCAACCag-UGC----UGCGCa-ACG- -5'
23227 3' -52.1 NC_005259.1 + 51262 0.68 0.821499
Target:  5'- -cGGcUCGcggUGGUCACGGUGCGcgGCa -3'
miRNA:   3'- cuCCuAGCa--ACCAGUGCUGCGCaaCG- -5'
23227 3' -52.1 NC_005259.1 + 9459 0.7 0.763144
Target:  5'- cGAGGGUCcgcacGGUCACGucaGUGUUGUc -3'
miRNA:   3'- -CUCCUAGcaa--CCAGUGCug-CGCAACG- -5'
23227 3' -52.1 NC_005259.1 + 56170 0.7 0.721412
Target:  5'- ----cUCGUUGGcCACGgugccgacauACGCGUUGCg -3'
miRNA:   3'- cuccuAGCAACCaGUGC----------UGCGCAACG- -5'
23227 3' -52.1 NC_005259.1 + 28013 0.72 0.612436
Target:  5'- cGGGGUCGccggGGUUGCG-CGCGUUGg -3'
miRNA:   3'- cUCCUAGCaa--CCAGUGCuGCGCAACg -5'
23227 3' -52.1 NC_005259.1 + 63235 0.77 0.361758
Target:  5'- cGGGGUCGcUGGUCAgaccCGACGCGUcGUa -3'
miRNA:   3'- cUCCUAGCaACCAGU----GCUGCGCAaCG- -5'
23227 3' -52.1 NC_005259.1 + 49857 1.13 0.001581
Target:  5'- cGAGGAUCGUUGGUCACGACGCGUUGCg -3'
miRNA:   3'- -CUCCUAGCAACCAGUGCUGCGCAACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.