Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23227 | 3' | -52.1 | NC_005259.1 | + | 55177 | 0.66 | 0.932645 |
Target: 5'- ------aGUcGGUCACGAC-CGUUGCg -3' miRNA: 3'- cuccuagCAaCCAGUGCUGcGCAACG- -5' |
|||||||
23227 | 3' | -52.1 | NC_005259.1 | + | 4155 | 0.66 | 0.932645 |
Target: 5'- aAGGAcgCGaUGGUCACGAUGgucaCGcUGCu -3' miRNA: 3'- cUCCUa-GCaACCAGUGCUGC----GCaACG- -5' |
|||||||
23227 | 3' | -52.1 | NC_005259.1 | + | 67918 | 0.66 | 0.921233 |
Target: 5'- cGAGGucaagcgCGUaGGUCGCGAggaugaucuUGCGgUGCg -3' miRNA: 3'- -CUCCua-----GCAaCCAGUGCU---------GCGCaACG- -5' |
|||||||
23227 | 3' | -52.1 | NC_005259.1 | + | 58017 | 0.66 | 0.915114 |
Target: 5'- uGAGGAUCGUccGGcgagaCAgGGCGCGgaagUGUu -3' miRNA: 3'- -CUCCUAGCAa-CCa----GUgCUGCGCa---ACG- -5' |
|||||||
23227 | 3' | -52.1 | NC_005259.1 | + | 57914 | 0.66 | 0.90872 |
Target: 5'- -cGGAU-GUUGGUCGCGACcag-UGCc -3' miRNA: 3'- cuCCUAgCAACCAGUGCUGcgcaACG- -5' |
|||||||
23227 | 3' | -52.1 | NC_005259.1 | + | 32573 | 0.68 | 0.839473 |
Target: 5'- cGGGGAUagCGUUGGgcaGCGguuuACGCGcgUGCa -3' miRNA: 3'- -CUCCUA--GCAACCag-UGC----UGCGCa-ACG- -5' |
|||||||
23227 | 3' | -52.1 | NC_005259.1 | + | 51262 | 0.68 | 0.821499 |
Target: 5'- -cGGcUCGcggUGGUCACGGUGCGcgGCa -3' miRNA: 3'- cuCCuAGCa--ACCAGUGCUGCGCaaCG- -5' |
|||||||
23227 | 3' | -52.1 | NC_005259.1 | + | 9459 | 0.7 | 0.763144 |
Target: 5'- cGAGGGUCcgcacGGUCACGucaGUGUUGUc -3' miRNA: 3'- -CUCCUAGcaa--CCAGUGCug-CGCAACG- -5' |
|||||||
23227 | 3' | -52.1 | NC_005259.1 | + | 56170 | 0.7 | 0.721412 |
Target: 5'- ----cUCGUUGGcCACGgugccgacauACGCGUUGCg -3' miRNA: 3'- cuccuAGCAACCaGUGC----------UGCGCAACG- -5' |
|||||||
23227 | 3' | -52.1 | NC_005259.1 | + | 28013 | 0.72 | 0.612436 |
Target: 5'- cGGGGUCGccggGGUUGCG-CGCGUUGg -3' miRNA: 3'- cUCCUAGCaa--CCAGUGCuGCGCAACg -5' |
|||||||
23227 | 3' | -52.1 | NC_005259.1 | + | 63235 | 0.77 | 0.361758 |
Target: 5'- cGGGGUCGcUGGUCAgaccCGACGCGUcGUa -3' miRNA: 3'- cUCCUAGCaACCAGU----GCUGCGCAaCG- -5' |
|||||||
23227 | 3' | -52.1 | NC_005259.1 | + | 49857 | 1.13 | 0.001581 |
Target: 5'- cGAGGAUCGUUGGUCACGACGCGUUGCg -3' miRNA: 3'- -CUCCUAGCAACCAGUGCUGCGCAACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home