miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23227 5' -55.7 NC_005259.1 + 45080 0.66 0.773834
Target:  5'- cUGUuGGUGCuGUCGagcgUGCCCGUGUAg -3'
miRNA:   3'- cGCGuUCAUGcCAGC----ACGGGCGCAUg -5'
23227 5' -55.7 NC_005259.1 + 50162 0.66 0.74375
Target:  5'- cGCGUGAGcgaGCGGUgGaaUGCCCGCa--- -3'
miRNA:   3'- -CGCGUUCa--UGCCAgC--ACGGGCGcaug -5'
23227 5' -55.7 NC_005259.1 + 56914 0.66 0.733491
Target:  5'- cCGCAGca--GG-CGUGCCCGCGUc- -3'
miRNA:   3'- cGCGUUcaugCCaGCACGGGCGCAug -5'
23227 5' -55.7 NC_005259.1 + 45971 0.67 0.712694
Target:  5'- uGC-CGAGcuugGCGaGU-GUGUCCGCGUACa -3'
miRNA:   3'- -CGcGUUCa---UGC-CAgCACGGGCGCAUG- -5'
23227 5' -55.7 NC_005259.1 + 37976 0.67 0.712694
Target:  5'- -gGC-AGUGC-GUCGUacugcGCCUGCGUGCc -3'
miRNA:   3'- cgCGuUCAUGcCAGCA-----CGGGCGCAUG- -5'
23227 5' -55.7 NC_005259.1 + 55764 0.67 0.702177
Target:  5'- uGCGCAGccgcGUACGcGUCGagcucgGCCCGCu--- -3'
miRNA:   3'- -CGCGUU----CAUGC-CAGCa-----CGGGCGcaug -5'
23227 5' -55.7 NC_005259.1 + 24247 0.67 0.680956
Target:  5'- aCGCGAGUuCGGcgagugCGUGCaCGCGUGg -3'
miRNA:   3'- cGCGUUCAuGCCa-----GCACGgGCGCAUg -5'
23227 5' -55.7 NC_005259.1 + 68786 0.68 0.670274
Target:  5'- -aGCAGGUcguacgccgggGCGGUgucgGUGCCCG-GUACa -3'
miRNA:   3'- cgCGUUCA-----------UGCCAg---CACGGGCgCAUG- -5'
23227 5' -55.7 NC_005259.1 + 21955 0.68 0.648817
Target:  5'- gGCGCAAGg-----CGUGaCCCGCGUGg -3'
miRNA:   3'- -CGCGUUCaugccaGCAC-GGGCGCAUg -5'
23227 5' -55.7 NC_005259.1 + 21249 0.68 0.616545
Target:  5'- cGCGCGGGUucuggaaagcccAUGGUCGUcgGCCUGaCGaGCa -3'
miRNA:   3'- -CGCGUUCA------------UGCCAGCA--CGGGC-GCaUG- -5'
23227 5' -55.7 NC_005259.1 + 49985 0.69 0.605801
Target:  5'- cGCGCAcggaucgcGUGCGGaCGgcUGCCCuCGUGCa -3'
miRNA:   3'- -CGCGUu-------CAUGCCaGC--ACGGGcGCAUG- -5'
23227 5' -55.7 NC_005259.1 + 41656 0.69 0.59508
Target:  5'- gGCGCucGGUgaGCGGgaucUGCaCCGCGUGCg -3'
miRNA:   3'- -CGCGu-UCA--UGCCagc-ACG-GGCGCAUG- -5'
23227 5' -55.7 NC_005259.1 + 14091 0.69 0.584388
Target:  5'- uGCGCAgcgaggucgagGGUGCGGaaaCGcaUGCCauCGCGUGCa -3'
miRNA:   3'- -CGCGU-----------UCAUGCCa--GC--ACGG--GCGCAUG- -5'
23227 5' -55.7 NC_005259.1 + 14463 0.69 0.581188
Target:  5'- uGUGCGGGUGCcuucacgcucguGGUCcgauccgcugcucgGUGCCCGCaUGCa -3'
miRNA:   3'- -CGCGUUCAUG------------CCAG--------------CACGGGCGcAUG- -5'
23227 5' -55.7 NC_005259.1 + 9126 0.73 0.352814
Target:  5'- cGCGCcccGGUACGGgcagccgugcUCGUGCCCGuCG-ACg -3'
miRNA:   3'- -CGCGu--UCAUGCC----------AGCACGGGC-GCaUG- -5'
23227 5' -55.7 NC_005259.1 + 14841 0.74 0.336613
Target:  5'- aCGCAucGUggacACGGUCGUGCUCGCGa-- -3'
miRNA:   3'- cGCGUu-CA----UGCCAGCACGGGCGCaug -5'
23227 5' -55.7 NC_005259.1 + 4628 0.74 0.320961
Target:  5'- gGCGCGAGUucUGGauaGUGCCCGCGcACc -3'
miRNA:   3'- -CGCGUUCAu-GCCag-CACGGGCGCaUG- -5'
23227 5' -55.7 NC_005259.1 + 49891 0.87 0.042237
Target:  5'- uGCGCAugaa-GGUCGUGCCCGCGUACc -3'
miRNA:   3'- -CGCGUucaugCCAGCACGGGCGCAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.