miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 37477 0.67 0.866848
Target:  5'- cGCCGCCGUUGGcugACccaccccCGGCGGugaGCa -3'
miRNA:   3'- -CGGUGGCAGCCaa-UGua-----GCCGUUg--CG- -5'
23228 5' -52.9 NC_005259.1 + 34548 0.67 0.866053
Target:  5'- aGCCucagcuuGCCGUCGGggcCGaCGGCGAgGUu -3'
miRNA:   3'- -CGG-------UGGCAGCCaauGUaGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 33317 0.67 0.858787
Target:  5'- cCCGCCGUCGG------CGGUcACGCg -3'
miRNA:   3'- cGGUGGCAGCCaauguaGCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 60153 0.67 0.866848
Target:  5'- gGCCGCCGccucagCGGccucACGggCGGCgAACGCc -3'
miRNA:   3'- -CGGUGGCa-----GCCaa--UGUa-GCCG-UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 46948 0.67 0.87467
Target:  5'- cGCCGCCGacCGcGUUGagcuuGUUGGCcACGCc -3'
miRNA:   3'- -CGGUGGCa-GC-CAAUg----UAGCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 46650 0.67 0.87467
Target:  5'- gGCCACaCGgcugCGGUUGagguucUCGGCGA-GCu -3'
miRNA:   3'- -CGGUG-GCa---GCCAAUgu----AGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 41598 0.67 0.87467
Target:  5'- gGUCGCgCGUCGGUguu-UCGGau-CGCg -3'
miRNA:   3'- -CGGUG-GCAGCCAauguAGCCguuGCG- -5'
23228 5' -52.9 NC_005259.1 + 47235 0.68 0.796342
Target:  5'- -aCGCUGUUGGUgaACGucgaccagcgcUCGGUGACGCg -3'
miRNA:   3'- cgGUGGCAGCCAa-UGU-----------AGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 67208 0.68 0.786672
Target:  5'- cGCCGCUGUCGGcgGgGUcgaugccgaccaCGGCggUGUa -3'
miRNA:   3'- -CGGUGGCAGCCaaUgUA------------GCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 56272 0.68 0.786672
Target:  5'- cGCCGCCGccCGGcccgUAUCGGCAccaGCa -3'
miRNA:   3'- -CGGUGGCa-GCCaau-GUAGCCGUug-CG- -5'
23228 5' -52.9 NC_005259.1 + 13429 0.68 0.833245
Target:  5'- cGCCGCCGgggccgCGcuaggcGUgacCGUCGGCGcgGCGCu -3'
miRNA:   3'- -CGGUGGCa-----GC------CAau-GUAGCCGU--UGCG- -5'
23228 5' -52.9 NC_005259.1 + 58862 0.68 0.786672
Target:  5'- gGCuCGCCGUCGucgucGUcGCcUCGGCAuCGCc -3'
miRNA:   3'- -CG-GUGGCAGC-----CAaUGuAGCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 23325 0.68 0.81517
Target:  5'- uGUCGCCGagcCGGaUUACAUCGGgcuCGAgGCu -3'
miRNA:   3'- -CGGUGGCa--GCC-AAUGUAGCC---GUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 26801 0.68 0.823401
Target:  5'- cGCCGCCGccCGGUuggccggUACcggCGGUggUGCc -3'
miRNA:   3'- -CGGUGGCa-GCCA-------AUGua-GCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 48354 0.68 0.824306
Target:  5'- gGCgAUUGUCGa-UACGUCGGUugucGACGCg -3'
miRNA:   3'- -CGgUGGCAGCcaAUGUAGCCG----UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 61911 0.68 0.824306
Target:  5'- gGUCGCCgGUCGu---CGUCGGCAgcucggucucucGCGCg -3'
miRNA:   3'- -CGGUGG-CAGCcaauGUAGCCGU------------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 10322 0.68 0.833245
Target:  5'- cGUCAUCGggcUCGGcgACGggcUCGGCGGCaGCg -3'
miRNA:   3'- -CGGUGGC---AGCCaaUGU---AGCCGUUG-CG- -5'
23228 5' -52.9 NC_005259.1 + 6121 0.68 0.81517
Target:  5'- gGCCGCCGcuacgCGGgcACu---GCAACGCg -3'
miRNA:   3'- -CGGUGGCa----GCCaaUGuagcCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 50272 0.68 0.796342
Target:  5'- cGCUGUCGUCGGUggcgggaACGUCGuGCA-CGCu -3'
miRNA:   3'- -CGGUGGCAGCCAa------UGUAGC-CGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 2235 0.69 0.776845
Target:  5'- cGCCAuUUGUCGGcgACAgccgguaCGGCGACGa -3'
miRNA:   3'- -CGGU-GGCAGCCaaUGUa------GCCGUUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.