miRNA display CGI


Results 61 - 80 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 49628 0.69 0.73618
Target:  5'- cGUCAUCGgCGGcagccGCGUCGGCGAUGg -3'
miRNA:   3'- -CGGUGGCaGCCaa---UGUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 21166 0.69 0.735139
Target:  5'- cGUCACCGacggcagUCGGgu-CAUCGGCGcgaGCa -3'
miRNA:   3'- -CGGUGGC-------AGCCaauGUAGCCGUug-CG- -5'
23228 5' -52.9 NC_005259.1 + 27385 0.69 0.73618
Target:  5'- gGUgACCGgcggCGGU---GUCGGCAGCGg -3'
miRNA:   3'- -CGgUGGCa---GCCAaugUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 25923 0.69 0.73618
Target:  5'- cGCCGCCGcCGGUc----CGGUgAGCGCa -3'
miRNA:   3'- -CGGUGGCaGCCAauguaGCCG-UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 49699 0.69 0.756761
Target:  5'- cGCuCGCUGUCGGUgagauccgGCAgauauUCGGCGG-GCg -3'
miRNA:   3'- -CG-GUGGCAGCCAa-------UGU-----AGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 22639 0.69 0.760821
Target:  5'- cGCCG-CGUCGGUcgacgccgcccaccACAUCGcCGACGCa -3'
miRNA:   3'- -CGGUgGCAGCCAa-------------UGUAGCcGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 33226 0.69 0.763852
Target:  5'- uGCCGCCGcCGGUcaccGCGUaCGugccagaucugcccGCAGCGCc -3'
miRNA:   3'- -CGGUGGCaGCCAa---UGUA-GC--------------CGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 2235 0.69 0.776845
Target:  5'- cGCCAuUUGUCGGcgACAgccgguaCGGCGACGa -3'
miRNA:   3'- -CGGU-GGCAGCCaaUGUa------GCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 58710 0.69 0.766871
Target:  5'- cGCCGCCGUCaccaucgccgggGGUguCGUUGGCAcCGg -3'
miRNA:   3'- -CGGUGGCAG------------CCAauGUAGCCGUuGCg -5'
23228 5' -52.9 NC_005259.1 + 4609 0.69 0.776845
Target:  5'- gGCaCGCUGUCGGgc----CGGUGGCGCg -3'
miRNA:   3'- -CG-GUGGCAGCCaauguaGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 8352 0.69 0.766871
Target:  5'- cGCUGCUGcCGGUaucGC-UCGGCGGCGg -3'
miRNA:   3'- -CGGUGGCaGCCAa--UGuAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 22385 0.69 0.776845
Target:  5'- aGCC-CgGUCGGcc---UCGGCGACGUg -3'
miRNA:   3'- -CGGuGgCAGCCaauguAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 66137 0.7 0.704568
Target:  5'- gGCCAUCaGaCGGcgUGCGUUGGCAuccuguguGCGCg -3'
miRNA:   3'- -CGGUGG-CaGCCa-AUGUAGCCGU--------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 44245 0.7 0.693878
Target:  5'- cGCCGCCcgcgcgcgagaaGUCGGcgACAUCgaGGCcgAACGCc -3'
miRNA:   3'- -CGGUGG------------CAGCCaaUGUAG--CCG--UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 51133 0.7 0.693878
Target:  5'- aUCACCGUCGGgg----CGGCcaugAGCGCg -3'
miRNA:   3'- cGGUGGCAGCCaauguaGCCG----UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 44623 0.7 0.704568
Target:  5'- uGCCGCCGUaGGUUGCGccuugacCGGUGcCGCc -3'
miRNA:   3'- -CGGUGGCAgCCAAUGUa------GCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 16449 0.7 0.715189
Target:  5'- gGgCACCGUCGG---CAUCGGUAcccCGCc -3'
miRNA:   3'- -CgGUGGCAGCCaauGUAGCCGUu--GCG- -5'
23228 5' -52.9 NC_005259.1 + 50650 0.7 0.683129
Target:  5'- cGCCGCCcUCGGggcCAUagGGCAccaGCGCg -3'
miRNA:   3'- -CGGUGGcAGCCaauGUAg-CCGU---UGCG- -5'
23228 5' -52.9 NC_005259.1 + 20476 0.7 0.687435
Target:  5'- aCCGCCGUCGaccucgacaccgcccGgcagcuCAUCGGCGACGg -3'
miRNA:   3'- cGGUGGCAGC---------------Caau---GUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 30550 0.7 0.72468
Target:  5'- gGCCACCGagCGGUUguugacgcccuugGCcgCaGUAGCGCu -3'
miRNA:   3'- -CGGUGGCa-GCCAA-------------UGuaGcCGUUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.