miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 20476 0.7 0.687435
Target:  5'- aCCGCCGUCGaccucgacaccgcccGgcagcuCAUCGGCGACGg -3'
miRNA:   3'- cGGUGGCAGC---------------Caau---GUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 50650 0.7 0.683129
Target:  5'- cGCCGCCcUCGGggcCAUagGGCAccaGCGCg -3'
miRNA:   3'- -CGGUGGcAGCCaauGUAg-CCGU---UGCG- -5'
23228 5' -52.9 NC_005259.1 + 37955 0.7 0.683129
Target:  5'- -aUACCGuUCGGgcucUugGUCGGCAGUGCg -3'
miRNA:   3'- cgGUGGC-AGCCa---AugUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 8352 0.69 0.766871
Target:  5'- cGCUGCUGcCGGUaucGC-UCGGCGGCGg -3'
miRNA:   3'- -CGGUGGCaGCCAa--UGuAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 4609 0.69 0.776845
Target:  5'- gGCaCGCUGUCGGgc----CGGUGGCGCg -3'
miRNA:   3'- -CG-GUGGCAGCCaauguaGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 22385 0.69 0.776845
Target:  5'- aGCC-CgGUCGGcc---UCGGCGACGUg -3'
miRNA:   3'- -CGGuGgCAGCCaauguAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 2235 0.69 0.776845
Target:  5'- cGCCAuUUGUCGGcgACAgccgguaCGGCGACGa -3'
miRNA:   3'- -CGGU-GGCAGCCaaUGUa------GCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 52620 0.69 0.776845
Target:  5'- gGCCAacuaCGUCGaGcUGCGUCGGCugugGgGCg -3'
miRNA:   3'- -CGGUg---GCAGC-CaAUGUAGCCGu---UgCG- -5'
23228 5' -52.9 NC_005259.1 + 58710 0.69 0.766871
Target:  5'- cGCCGCCGUCaccaucgccgggGGUguCGUUGGCAcCGg -3'
miRNA:   3'- -CGGUGGCAG------------CCAauGUAGCCGUuGCg -5'
23228 5' -52.9 NC_005259.1 + 33226 0.69 0.763852
Target:  5'- uGCCGCCGcCGGUcaccGCGUaCGugccagaucugcccGCAGCGCc -3'
miRNA:   3'- -CGGUGGCaGCCAa---UGUA-GC--------------CGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 22639 0.69 0.760821
Target:  5'- cGCCG-CGUCGGUcgacgccgcccaccACAUCGcCGACGCa -3'
miRNA:   3'- -CGGUgGCAGCCAa-------------UGUAGCcGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 21166 0.69 0.735139
Target:  5'- cGUCACCGacggcagUCGGgu-CAUCGGCGcgaGCa -3'
miRNA:   3'- -CGGUGGC-------AGCCaauGUAGCCGUug-CG- -5'
23228 5' -52.9 NC_005259.1 + 27385 0.69 0.73618
Target:  5'- gGUgACCGgcggCGGU---GUCGGCAGCGg -3'
miRNA:   3'- -CGgUGGCa---GCCAaugUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 25923 0.69 0.73618
Target:  5'- cGCCGCCGcCGGUc----CGGUgAGCGCa -3'
miRNA:   3'- -CGGUGGCaGCCAauguaGCCG-UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 49628 0.69 0.73618
Target:  5'- cGUCAUCGgCGGcagccGCGUCGGCGAUGg -3'
miRNA:   3'- -CGGUGGCaGCCaa---UGUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 49699 0.69 0.756761
Target:  5'- cGCuCGCUGUCGGUgagauccgGCAgauauUCGGCGG-GCg -3'
miRNA:   3'- -CG-GUGGCAGCCAa-------UGU-----AGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 67208 0.68 0.786672
Target:  5'- cGCCGCUGUCGGcgGgGUcgaugccgaccaCGGCggUGUa -3'
miRNA:   3'- -CGGUGGCAGCCaaUgUA------------GCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 58862 0.68 0.786672
Target:  5'- gGCuCGCCGUCGucgucGUcGCcUCGGCAuCGCc -3'
miRNA:   3'- -CG-GUGGCAGC-----CAaUGuAGCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 47235 0.68 0.796342
Target:  5'- -aCGCUGUUGGUgaACGucgaccagcgcUCGGUGACGCg -3'
miRNA:   3'- cgGUGGCAGCCAa-UGU-----------AGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 50272 0.68 0.796342
Target:  5'- cGCUGUCGUCGGUggcgggaACGUCGuGCA-CGCu -3'
miRNA:   3'- -CGGUGGCAGCCAa------UGUAGC-CGUuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.