miRNA display CGI


Results 61 - 80 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 13429 0.68 0.833245
Target:  5'- cGCCGCCGgggccgCGcuaggcGUgacCGUCGGCGcgGCGCu -3'
miRNA:   3'- -CGGUGGCa-----GC------CAau-GUAGCCGU--UGCG- -5'
23228 5' -52.9 NC_005259.1 + 23325 0.68 0.81517
Target:  5'- uGUCGCCGagcCGGaUUACAUCGGgcuCGAgGCu -3'
miRNA:   3'- -CGGUGGCa--GCC-AAUGUAGCC---GUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 6121 0.68 0.81517
Target:  5'- gGCCGCCGcuacgCGGgcACu---GCAACGCg -3'
miRNA:   3'- -CGGUGGCa----GCCaaUGuagcCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 50272 0.68 0.796342
Target:  5'- cGCUGUCGUCGGUggcgggaACGUCGuGCA-CGCu -3'
miRNA:   3'- -CGGUGGCAGCCAa------UGUAGC-CGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 47235 0.68 0.796342
Target:  5'- -aCGCUGUUGGUgaACGucgaccagcgcUCGGUGACGCg -3'
miRNA:   3'- cgGUGGCAGCCAa-UGU-----------AGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 58862 0.68 0.786672
Target:  5'- gGCuCGCCGUCGucgucGUcGCcUCGGCAuCGCc -3'
miRNA:   3'- -CG-GUGGCAGC-----CAaUGuAGCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 67208 0.68 0.786672
Target:  5'- cGCCGCUGUCGGcgGgGUcgaugccgaccaCGGCggUGUa -3'
miRNA:   3'- -CGGUGGCAGCCaaUgUA------------GCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 56272 0.68 0.786672
Target:  5'- cGCCGCCGccCGGcccgUAUCGGCAccaGCa -3'
miRNA:   3'- -CGGUGGCa-GCCaau-GUAGCCGUug-CG- -5'
23228 5' -52.9 NC_005259.1 + 44470 0.67 0.850494
Target:  5'- uGCCGCCGcccuggcCGGgccaGUUGGUGACGUa -3'
miRNA:   3'- -CGGUGGCa------GCCaaugUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 3289 0.67 0.850494
Target:  5'- cGCCGCCucGcCGGUccC-UCGGCgAGCGCu -3'
miRNA:   3'- -CGGUGG--CaGCCAauGuAGCCG-UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 13098 0.67 0.858787
Target:  5'- uGCCACCGacccCGGcccGC-UCGGCGgcuacgaccaGCGCa -3'
miRNA:   3'- -CGGUGGCa---GCCaa-UGuAGCCGU----------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 34025 0.67 0.858787
Target:  5'- gGCC-UCGgCGGcgUGCGUCGGC-GCGUu -3'
miRNA:   3'- -CGGuGGCaGCCa-AUGUAGCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 33317 0.67 0.858787
Target:  5'- cCCGCCGUCGG------CGGUcACGCg -3'
miRNA:   3'- cGGUGGCAGCCaauguaGCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 11548 0.67 0.850494
Target:  5'- uGCCGCaCGUCaGGcggacaUUugAUCGGUAGCa- -3'
miRNA:   3'- -CGGUG-GCAG-CC------AAugUAGCCGUUGcg -5'
23228 5' -52.9 NC_005259.1 + 43177 0.67 0.850494
Target:  5'- aGCgCGaaGUCGGUaccgACcUCGGCGGCGa -3'
miRNA:   3'- -CG-GUggCAGCCAa---UGuAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 7921 0.67 0.850494
Target:  5'- uGCCGCCcUUGGUcuCGUgGGCcuucuuGCGCg -3'
miRNA:   3'- -CGGUGGcAGCCAauGUAgCCGu-----UGCG- -5'
23228 5' -52.9 NC_005259.1 + 179 0.67 0.850494
Target:  5'- aCCACCGacUCGGU--CAUCuauGGCGcgugGCGCg -3'
miRNA:   3'- cGGUGGC--AGCCAauGUAG---CCGU----UGCG- -5'
23228 5' -52.9 NC_005259.1 + 68298 0.67 0.841978
Target:  5'- -aCAUCGggaUCGGgcGCGUcCGGCGACGg -3'
miRNA:   3'- cgGUGGC---AGCCaaUGUA-GCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 51263 0.67 0.841978
Target:  5'- gGCuCGCgGUggucaCGGUgcgcgGCAagCGGCAGCGCc -3'
miRNA:   3'- -CG-GUGgCA-----GCCAa----UGUa-GCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 34548 0.67 0.866053
Target:  5'- aGCCucagcuuGCCGUCGGggcCGaCGGCGAgGUu -3'
miRNA:   3'- -CGG-------UGGCAGCCaauGUaGCCGUUgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.