Results 81 - 100 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 33317 | 0.67 | 0.858787 |
Target: 5'- cCCGCCGUCGG------CGGUcACGCg -3' miRNA: 3'- cGGUGGCAGCCaauguaGCCGuUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 47681 | 0.67 | 0.841114 |
Target: 5'- gGCCACCuuuugcaugcccgGUUGGaUGCG-CGGCAGUGCc -3' miRNA: 3'- -CGGUGG-------------CAGCCaAUGUaGCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 51263 | 0.67 | 0.841978 |
Target: 5'- gGCuCGCgGUggucaCGGUgcgcgGCAagCGGCAGCGCc -3' miRNA: 3'- -CG-GUGgCA-----GCCAa----UGUa-GCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 68298 | 0.67 | 0.841978 |
Target: 5'- -aCAUCGggaUCGGgcGCGUcCGGCGACGg -3' miRNA: 3'- cgGUGGC---AGCCaaUGUA-GCCGUUGCg -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 179 | 0.67 | 0.850494 |
Target: 5'- aCCACCGacUCGGU--CAUCuauGGCGcgugGCGCg -3' miRNA: 3'- cGGUGGC--AGCCAauGUAG---CCGU----UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 7921 | 0.67 | 0.850494 |
Target: 5'- uGCCGCCcUUGGUcuCGUgGGCcuucuuGCGCg -3' miRNA: 3'- -CGGUGGcAGCCAauGUAgCCGu-----UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 43177 | 0.67 | 0.850494 |
Target: 5'- aGCgCGaaGUCGGUaccgACcUCGGCGGCGa -3' miRNA: 3'- -CG-GUggCAGCCAa---UGuAGCCGUUGCg -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 11548 | 0.67 | 0.850494 |
Target: 5'- uGCCGCaCGUCaGGcggacaUUugAUCGGUAGCa- -3' miRNA: 3'- -CGGUG-GCAG-CC------AAugUAGCCGUUGcg -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 44470 | 0.67 | 0.850494 |
Target: 5'- uGCCGCCGcccuggcCGGgccaGUUGGUGACGUa -3' miRNA: 3'- -CGGUGGCa------GCCaaugUAGCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 3289 | 0.67 | 0.850494 |
Target: 5'- cGCCGCCucGcCGGUccC-UCGGCgAGCGCu -3' miRNA: 3'- -CGGUGG--CaGCCAauGuAGCCG-UUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 13098 | 0.67 | 0.858787 |
Target: 5'- uGCCACCGacccCGGcccGC-UCGGCGgcuacgaccaGCGCa -3' miRNA: 3'- -CGGUGGCa---GCCaa-UGuAGCCGU----------UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 34025 | 0.67 | 0.858787 |
Target: 5'- gGCC-UCGgCGGcgUGCGUCGGC-GCGUu -3' miRNA: 3'- -CGGuGGCaGCCa-AUGUAGCCGuUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 27748 | 0.66 | 0.889573 |
Target: 5'- uGCUGCCcaCGG-UGCAucgcccUCGGCGACGa -3' miRNA: 3'- -CGGUGGcaGCCaAUGU------AGCCGUUGCg -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 17469 | 0.66 | 0.889573 |
Target: 5'- cCCACCGU-GGUgACGccCGGCcAUGCg -3' miRNA: 3'- cGGUGGCAgCCAaUGUa-GCCGuUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 2087 | 0.66 | 0.889573 |
Target: 5'- gGCCugC-UCGaUUuCAUCGGCGAgGCc -3' miRNA: 3'- -CGGugGcAGCcAAuGUAGCCGUUgCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 27162 | 0.66 | 0.889573 |
Target: 5'- gGCCaacgauGCCGUCGGcgaugaGCAggCuGCGACGCu -3' miRNA: 3'- -CGG------UGGCAGCCaa----UGUa-GcCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 66886 | 0.66 | 0.882991 |
Target: 5'- cGCCACgGcuugaucgugaacggCGG-UAgAUcCGGCAGCGCg -3' miRNA: 3'- -CGGUGgCa--------------GCCaAUgUA-GCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 12291 | 0.66 | 0.882247 |
Target: 5'- cGCCGCCGcgccucgaugCGGgcaAUGUCGGUG-CGCa -3' miRNA: 3'- -CGGUGGCa---------GCCaa-UGUAGCCGUuGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 17024 | 0.66 | 0.882247 |
Target: 5'- cGCCAUCcUCGGcgcugGCAUCGaCAACcGCg -3' miRNA: 3'- -CGGUGGcAGCCaa---UGUAGCcGUUG-CG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 60379 | 0.66 | 0.909997 |
Target: 5'- cGCCaAUCGcCGG--ACAgCGGCGAgGCg -3' miRNA: 3'- -CGG-UGGCaGCCaaUGUaGCCGUUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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