Results 61 - 80 of 115 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 43177 | 0.67 | 0.850494 |
Target: 5'- aGCgCGaaGUCGGUaccgACcUCGGCGGCGa -3' miRNA: 3'- -CG-GUggCAGCCAa---UGuAGCCGUUGCg -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 44245 | 0.7 | 0.693878 |
Target: 5'- cGCCGCCcgcgcgcgagaaGUCGGcgACAUCgaGGCcgAACGCc -3' miRNA: 3'- -CGGUGG------------CAGCCaaUGUAG--CCG--UUGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 44398 | 0.74 | 0.480596 |
Target: 5'- cGCCGagcaCGUCGGUgcccGCcugacCGGCAGCGCc -3' miRNA: 3'- -CGGUg---GCAGCCAa---UGua---GCCGUUGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 44470 | 0.67 | 0.850494 |
Target: 5'- uGCCGCCGcccuggcCGGgccaGUUGGUGACGUa -3' miRNA: 3'- -CGGUGGCa------GCCaaugUAGCCGUUGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 44623 | 0.7 | 0.704568 |
Target: 5'- uGCCGCCGUaGGUUGCGccuugacCGGUGcCGCc -3' miRNA: 3'- -CGGUGGCAgCCAAUGUa------GCCGUuGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 46323 | 0.71 | 0.62888 |
Target: 5'- gGCC-CCGagGGUcGCGUCGcGCAcCGCu -3' miRNA: 3'- -CGGuGGCagCCAaUGUAGC-CGUuGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 46650 | 0.67 | 0.87467 |
Target: 5'- gGCCACaCGgcugCGGUUGagguucUCGGCGA-GCu -3' miRNA: 3'- -CGGUG-GCa---GCCAAUgu----AGCCGUUgCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 46948 | 0.67 | 0.87467 |
Target: 5'- cGCCGCCGacCGcGUUGagcuuGUUGGCcACGCc -3' miRNA: 3'- -CGGUGGCa-GC-CAAUg----UAGCCGuUGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 47168 | 0.67 | 0.87467 |
Target: 5'- aUCACCGUagCGGcgaAgGUCGGCggUGCc -3' miRNA: 3'- cGGUGGCA--GCCaa-UgUAGCCGuuGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 47235 | 0.68 | 0.796342 |
Target: 5'- -aCGCUGUUGGUgaACGucgaccagcgcUCGGUGACGCg -3' miRNA: 3'- cgGUGGCAGCCAa-UGU-----------AGCCGUUGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 47681 | 0.67 | 0.841114 |
Target: 5'- gGCCACCuuuugcaugcccgGUUGGaUGCG-CGGCAGUGCc -3' miRNA: 3'- -CGGUGG-------------CAGCCaAUGUaGCCGUUGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 48354 | 0.68 | 0.824306 |
Target: 5'- gGCgAUUGUCGa-UACGUCGGUugucGACGCg -3' miRNA: 3'- -CGgUGGCAGCcaAUGUAGCCG----UUGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 48433 | 0.74 | 0.490713 |
Target: 5'- aCCACCGaggCGcGagGCAgCGGCAGCGCg -3' miRNA: 3'- cGGUGGCa--GC-CaaUGUaGCCGUUGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 48464 | 0.71 | 0.672333 |
Target: 5'- uCCACCGcgcgcCGGgucGCGUCGGCcuguuccucGACGCg -3' miRNA: 3'- cGGUGGCa----GCCaa-UGUAGCCG---------UUGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 48946 | 1.13 | 0.001433 |
Target: 5'- gGCCACCGUCGGUUACAUCGGCAACGCc -3' miRNA: 3'- -CGGUGGCAGCCAAUGUAGCCGUUGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 49303 | 0.67 | 0.873899 |
Target: 5'- -aCAUCGUCGGggucCAUCaGGCGcgagaauACGCg -3' miRNA: 3'- cgGUGGCAGCCaau-GUAG-CCGU-------UGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 49628 | 0.69 | 0.73618 |
Target: 5'- cGUCAUCGgCGGcagccGCGUCGGCGAUGg -3' miRNA: 3'- -CGGUGGCaGCCaa---UGUAGCCGUUGCg -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 49699 | 0.69 | 0.756761 |
Target: 5'- cGCuCGCUGUCGGUgagauccgGCAgauauUCGGCGG-GCg -3' miRNA: 3'- -CG-GUGGCAGCCAa-------UGU-----AGCCGUUgCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 50272 | 0.68 | 0.796342 |
Target: 5'- cGCUGUCGUCGGUggcgggaACGUCGuGCA-CGCu -3' miRNA: 3'- -CGGUGGCAGCCAa------UGUAGC-CGUuGCG- -5' |
|||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 50307 | 0.74 | 0.490713 |
Target: 5'- uGCCACuCGUCG--UAC-UCGGCAACGa -3' miRNA: 3'- -CGGUG-GCAGCcaAUGuAGCCGUUGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home