miRNA display CGI


Results 41 - 60 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 48946 1.13 0.001433
Target:  5'- gGCCACCGUCGGUUACAUCGGCAACGCc -3'
miRNA:   3'- -CGGUGGCAGCCAAUGUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 48464 0.71 0.672333
Target:  5'- uCCACCGcgcgcCGGgucGCGUCGGCcuguuccucGACGCg -3'
miRNA:   3'- cGGUGGCa----GCCaa-UGUAGCCG---------UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 48433 0.74 0.490713
Target:  5'- aCCACCGaggCGcGagGCAgCGGCAGCGCg -3'
miRNA:   3'- cGGUGGCa--GC-CaaUGUaGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 48354 0.68 0.824306
Target:  5'- gGCgAUUGUCGa-UACGUCGGUugucGACGCg -3'
miRNA:   3'- -CGgUGGCAGCcaAUGUAGCCG----UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 47681 0.67 0.841114
Target:  5'- gGCCACCuuuugcaugcccgGUUGGaUGCG-CGGCAGUGCc -3'
miRNA:   3'- -CGGUGG-------------CAGCCaAUGUaGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 47235 0.68 0.796342
Target:  5'- -aCGCUGUUGGUgaACGucgaccagcgcUCGGUGACGCg -3'
miRNA:   3'- cgGUGGCAGCCAa-UGU-----------AGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 47168 0.67 0.87467
Target:  5'- aUCACCGUagCGGcgaAgGUCGGCggUGCc -3'
miRNA:   3'- cGGUGGCA--GCCaa-UgUAGCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 46948 0.67 0.87467
Target:  5'- cGCCGCCGacCGcGUUGagcuuGUUGGCcACGCc -3'
miRNA:   3'- -CGGUGGCa-GC-CAAUg----UAGCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 46650 0.67 0.87467
Target:  5'- gGCCACaCGgcugCGGUUGagguucUCGGCGA-GCu -3'
miRNA:   3'- -CGGUG-GCa---GCCAAUgu----AGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 46323 0.71 0.62888
Target:  5'- gGCC-CCGagGGUcGCGUCGcGCAcCGCu -3'
miRNA:   3'- -CGGuGGCagCCAaUGUAGC-CGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 44623 0.7 0.704568
Target:  5'- uGCCGCCGUaGGUUGCGccuugacCGGUGcCGCc -3'
miRNA:   3'- -CGGUGGCAgCCAAUGUa------GCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 44470 0.67 0.850494
Target:  5'- uGCCGCCGcccuggcCGGgccaGUUGGUGACGUa -3'
miRNA:   3'- -CGGUGGCa------GCCaaugUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 44398 0.74 0.480596
Target:  5'- cGCCGagcaCGUCGGUgcccGCcugacCGGCAGCGCc -3'
miRNA:   3'- -CGGUg---GCAGCCAa---UGua---GCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 44245 0.7 0.693878
Target:  5'- cGCCGCCcgcgcgcgagaaGUCGGcgACAUCgaGGCcgAACGCc -3'
miRNA:   3'- -CGGUGG------------CAGCCaaUGUAG--CCG--UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 43177 0.67 0.850494
Target:  5'- aGCgCGaaGUCGGUaccgACcUCGGCGGCGa -3'
miRNA:   3'- -CG-GUggCAGCCAa---UGuAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 43091 0.66 0.909997
Target:  5'- uGCCGCCGaacagucccgUGGUcAgGUCuGGCAGCaGCg -3'
miRNA:   3'- -CGGUGGCa---------GCCAaUgUAG-CCGUUG-CG- -5'
23228 5' -52.9 NC_005259.1 + 41598 0.67 0.87467
Target:  5'- gGUCGCgCGUCGGUguu-UCGGau-CGCg -3'
miRNA:   3'- -CGGUG-GCAGCCAauguAGCCguuGCG- -5'
23228 5' -52.9 NC_005259.1 + 40888 0.82 0.181762
Target:  5'- gGCCACCGU-GGcgGgGUCGGCAGCGUc -3'
miRNA:   3'- -CGGUGGCAgCCaaUgUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 40217 0.72 0.574687
Target:  5'- uGCUgcuuGCCGUUGGUcGCGUCGaGCAACu- -3'
miRNA:   3'- -CGG----UGGCAGCCAaUGUAGC-CGUUGcg -5'
23228 5' -52.9 NC_005259.1 + 40143 0.73 0.511236
Target:  5'- aGCuCGCCGUCGGUU--GUCGGUgccCGCc -3'
miRNA:   3'- -CG-GUGGCAGCCAAugUAGCCGuu-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.