Results 101 - 115 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 12679 | 0.66 | 0.903452 |
Target: 5'- -aCACCGUCGGaugACGagGGagaGugGCu -3' miRNA: 3'- cgGUGGCAGCCaa-UGUagCCg--UugCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 12291 | 0.66 | 0.882247 |
Target: 5'- cGCCGCCGcgccucgaugCGGgcaAUGUCGGUG-CGCa -3' miRNA: 3'- -CGGUGGCa---------GCCaa-UGUAGCCGUuGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 11548 | 0.67 | 0.850494 |
Target: 5'- uGCCGCaCGUCaGGcggacaUUugAUCGGUAGCa- -3' miRNA: 3'- -CGGUG-GCAG-CC------AAugUAGCCGUUGcg -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 10322 | 0.68 | 0.833245 |
Target: 5'- cGUCAUCGggcUCGGcgACGggcUCGGCGGCaGCg -3' miRNA: 3'- -CGGUGGC---AGCCaaUGU---AGCCGUUG-CG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 8352 | 0.69 | 0.766871 |
Target: 5'- cGCUGCUGcCGGUaucGC-UCGGCGGCGg -3' miRNA: 3'- -CGGUGGCaGCCAa--UGuAGCCGUUGCg -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 7921 | 0.67 | 0.850494 |
Target: 5'- uGCCGCCcUUGGUcuCGUgGGCcuucuuGCGCg -3' miRNA: 3'- -CGGUGGcAGCCAauGUAgCCGu-----UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 7420 | 0.75 | 0.416596 |
Target: 5'- cGUCGCCGUCGGcggugcccgcgccGCAU-GGCAGCGCc -3' miRNA: 3'- -CGGUGGCAGCCaa-----------UGUAgCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 6442 | 0.73 | 0.553274 |
Target: 5'- cGgCACCGUCGcGcUG-AUCGGCAGCGUc -3' miRNA: 3'- -CgGUGGCAGC-CaAUgUAGCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 6121 | 0.68 | 0.81517 |
Target: 5'- gGCCGCCGcuacgCGGgcACu---GCAACGCg -3' miRNA: 3'- -CGGUGGCa----GCCaaUGuagcCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 4609 | 0.69 | 0.776845 |
Target: 5'- gGCaCGCUGUCGGgc----CGGUGGCGCg -3' miRNA: 3'- -CG-GUGGCAGCCaauguaGCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 4503 | 0.66 | 0.889573 |
Target: 5'- cGCCACCGcgcCGGgag---UGGCGcuGCGCg -3' miRNA: 3'- -CGGUGGCa--GCCaauguaGCCGU--UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 3289 | 0.67 | 0.850494 |
Target: 5'- cGCCGCCucGcCGGUccC-UCGGCgAGCGCu -3' miRNA: 3'- -CGGUGG--CaGCCAauGuAGCCG-UUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 2235 | 0.69 | 0.776845 |
Target: 5'- cGCCAuUUGUCGGcgACAgccgguaCGGCGACGa -3' miRNA: 3'- -CGGU-GGCAGCCaaUGUa------GCCGUUGCg -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 2087 | 0.66 | 0.889573 |
Target: 5'- gGCCugC-UCGaUUuCAUCGGCGAgGCc -3' miRNA: 3'- -CGGugGcAGCcAAuGUAGCCGUUgCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 179 | 0.67 | 0.850494 |
Target: 5'- aCCACCGacUCGGU--CAUCuauGGCGcgugGCGCg -3' miRNA: 3'- cGGUGGC--AGCCAauGUAG---CCGU----UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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