miRNA display CGI


Results 101 - 115 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 21166 0.69 0.735139
Target:  5'- cGUCACCGacggcagUCGGgu-CAUCGGCGcgaGCa -3'
miRNA:   3'- -CGGUGGC-------AGCCaauGUAGCCGUug-CG- -5'
23228 5' -52.9 NC_005259.1 + 30550 0.7 0.72468
Target:  5'- gGCCACCGagCGGUUguugacgcccuugGCcgCaGUAGCGCu -3'
miRNA:   3'- -CGGUGGCa-GCCAA-------------UGuaGcCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 61164 0.71 0.65064
Target:  5'- -aCACCGaCGGUgUACGccUCGGUAugGCc -3'
miRNA:   3'- cgGUGGCaGCCA-AUGU--AGCCGUugCG- -5'
23228 5' -52.9 NC_005259.1 + 48464 0.71 0.672333
Target:  5'- uCCACCGcgcgcCGGgucGCGUCGGCcuguuccucGACGCg -3'
miRNA:   3'- cGGUGGCa----GCCaa-UGUAGCCG---------UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 54486 0.71 0.672333
Target:  5'- cCCGCCGagGGU--CAUCGGCGG-GCa -3'
miRNA:   3'- cGGUGGCagCCAauGUAGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 68540 0.71 0.672333
Target:  5'- cGCCACgCGUCG---ACAUCGGgGugGUu -3'
miRNA:   3'- -CGGUG-GCAGCcaaUGUAGCCgUugCG- -5'
23228 5' -52.9 NC_005259.1 + 37955 0.7 0.683129
Target:  5'- -aUACCGuUCGGgcucUugGUCGGCAGUGCg -3'
miRNA:   3'- cgGUGGC-AGCCa---AugUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 50650 0.7 0.683129
Target:  5'- cGCCGCCcUCGGggcCAUagGGCAccaGCGCg -3'
miRNA:   3'- -CGGUGGcAGCCaauGUAg-CCGU---UGCG- -5'
23228 5' -52.9 NC_005259.1 + 20476 0.7 0.687435
Target:  5'- aCCGCCGUCGaccucgacaccgcccGgcagcuCAUCGGCGACGg -3'
miRNA:   3'- cGGUGGCAGC---------------Caau---GUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 44245 0.7 0.693878
Target:  5'- cGCCGCCcgcgcgcgagaaGUCGGcgACAUCgaGGCcgAACGCc -3'
miRNA:   3'- -CGGUGG------------CAGCCaaUGUAG--CCG--UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 51133 0.7 0.693878
Target:  5'- aUCACCGUCGGgg----CGGCcaugAGCGCg -3'
miRNA:   3'- cGGUGGCAGCCaauguaGCCG----UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 44623 0.7 0.704568
Target:  5'- uGCCGCCGUaGGUUGCGccuugacCGGUGcCGCc -3'
miRNA:   3'- -CGGUGGCAgCCAAUGUa------GCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 66137 0.7 0.704568
Target:  5'- gGCCAUCaGaCGGcgUGCGUUGGCAuccuguguGCGCg -3'
miRNA:   3'- -CGGUGG-CaGCCa-AUGUAGCCGU--------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 16449 0.7 0.715189
Target:  5'- gGgCACCGUCGG---CAUCGGUAcccCGCc -3'
miRNA:   3'- -CgGUGGCAGCCaauGUAGCCGUu--GCG- -5'
23228 5' -52.9 NC_005259.1 + 56272 0.68 0.786672
Target:  5'- cGCCGCCGccCGGcccgUAUCGGCAccaGCa -3'
miRNA:   3'- -CGGUGGCa-GCCaau-GUAGCCGUug-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.