Results 41 - 60 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 30096 | 0.76 | 0.368279 |
Target: 5'- cGCCcUCGUCGGagcugugUGCAUCGGCAuUGCc -3' miRNA: 3'- -CGGuGGCAGCCa------AUGUAGCCGUuGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 36238 | 0.76 | 0.359764 |
Target: 5'- gGCCAgCGcgagCGccUGCGUCGGCAGCGCc -3' miRNA: 3'- -CGGUgGCa---GCcaAUGUAGCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 52963 | 0.79 | 0.2685 |
Target: 5'- cGCCGCUGccCGGcUGCAUCGGCAA-GCa -3' miRNA: 3'- -CGGUGGCa-GCCaAUGUAGCCGUUgCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 66639 | 0.81 | 0.207517 |
Target: 5'- gGCCACCGcUCGGaUUGCugccgGUCGGCggUGCu -3' miRNA: 3'- -CGGUGGC-AGCC-AAUG-----UAGCCGuuGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 40888 | 0.82 | 0.181762 |
Target: 5'- gGCCACCGU-GGcgGgGUCGGCAGCGUc -3' miRNA: 3'- -CGGUGGCAgCCaaUgUAGCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 19059 | 0.73 | 0.532105 |
Target: 5'- cGCCACCGaugUCGGUgucGCGgucCGGCGcuacgacaagcuGCGCg -3' miRNA: 3'- -CGGUGGC---AGCCAa--UGUa--GCCGU------------UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 58962 | 0.73 | 0.532105 |
Target: 5'- gGCCAgCagGUCGGgcagcuCGUCGGCGACGg -3' miRNA: 3'- -CGGUgG--CAGCCaau---GUAGCCGUUGCg -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 51659 | 0.71 | 0.639764 |
Target: 5'- gGUUGCCGcgCGGgcGCGUCGgGCAcggGCGCg -3' miRNA: 3'- -CGGUGGCa-GCCaaUGUAGC-CGU---UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 46323 | 0.71 | 0.62888 |
Target: 5'- gGCC-CCGagGGUcGCGUCGcGCAcCGCu -3' miRNA: 3'- -CGGuGGCagCCAaUGUAGC-CGUuGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 34360 | 0.71 | 0.62888 |
Target: 5'- cCCACCGcCGGU---AUCGGCGcguaaccucgacGCGCa -3' miRNA: 3'- cGGUGGCaGCCAaugUAGCCGU------------UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 28229 | 0.72 | 0.618 |
Target: 5'- cGCCACCGUCGG------CGGCGGgGUg -3' miRNA: 3'- -CGGUGGCAGCCaauguaGCCGUUgCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 50751 | 0.72 | 0.616912 |
Target: 5'- aGCCGCCacgcgguGUCGGacgACAccUCGGCcuCGCg -3' miRNA: 3'- -CGGUGG-------CAGCCaa-UGU--AGCCGuuGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 23912 | 0.72 | 0.596284 |
Target: 5'- cCCGCCGUCGaaaUACAacggUCGGCAccaguacauguuGCGCa -3' miRNA: 3'- cGGUGGCAGCca-AUGU----AGCCGU------------UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 52769 | 0.72 | 0.585466 |
Target: 5'- --aGCuCGUCGGU---GUCGGCAGCGUg -3' miRNA: 3'- cggUG-GCAGCCAaugUAGCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 26119 | 0.72 | 0.585466 |
Target: 5'- cGCCGCCGcCGGUcGC--CGGUccGACGCc -3' miRNA: 3'- -CGGUGGCaGCCAaUGuaGCCG--UUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 64132 | 0.72 | 0.574687 |
Target: 5'- cGCCugACCGagCGGcc-CGUCGGCGAUGCc -3' miRNA: 3'- -CGG--UGGCa-GCCaauGUAGCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 40217 | 0.72 | 0.574687 |
Target: 5'- uGCUgcuuGCCGUUGGUcGCGUCGaGCAACu- -3' miRNA: 3'- -CGG----UGGCAGCCAaUGUAGC-CGUUGcg -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 67773 | 0.72 | 0.563953 |
Target: 5'- gGCCACCGaccacgCGGUgACcuuGUUGGCAcCGCg -3' miRNA: 3'- -CGGUGGCa-----GCCAaUG---UAGCCGUuGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 18729 | 0.73 | 0.553274 |
Target: 5'- gGCCGCCcggcaUCGGUaaguCGUCGGUggUGCu -3' miRNA: 3'- -CGGUGGc----AGCCAau--GUAGCCGuuGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 6442 | 0.73 | 0.553274 |
Target: 5'- cGgCACCGUCGcGcUG-AUCGGCAGCGUc -3' miRNA: 3'- -CgGUGGCAGC-CaAUgUAGCCGUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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