Results 61 - 80 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23228 | 5' | -52.9 | NC_005259.1 | + | 40217 | 0.72 | 0.574687 |
Target: 5'- uGCUgcuuGCCGUUGGUcGCGUCGaGCAACu- -3' miRNA: 3'- -CGG----UGGCAGCCAaUGUAGC-CGUUGcg -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 64132 | 0.72 | 0.574687 |
Target: 5'- cGCCugACCGagCGGcc-CGUCGGCGAUGCc -3' miRNA: 3'- -CGG--UGGCa-GCCaauGUAGCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 48464 | 0.71 | 0.672333 |
Target: 5'- uCCACCGcgcgcCGGgucGCGUCGGCcuguuccucGACGCg -3' miRNA: 3'- cGGUGGCa----GCCaa-UGUAGCCG---------UUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 54486 | 0.71 | 0.672333 |
Target: 5'- cCCGCCGagGGU--CAUCGGCGG-GCa -3' miRNA: 3'- cGGUGGCagCCAauGUAGCCGUUgCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 68540 | 0.71 | 0.672333 |
Target: 5'- cGCCACgCGUCG---ACAUCGGgGugGUu -3' miRNA: 3'- -CGGUG-GCAGCcaaUGUAGCCgUugCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 37955 | 0.7 | 0.683129 |
Target: 5'- -aUACCGuUCGGgcucUugGUCGGCAGUGCg -3' miRNA: 3'- cgGUGGC-AGCCa---AugUAGCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 50650 | 0.7 | 0.683129 |
Target: 5'- cGCCGCCcUCGGggcCAUagGGCAccaGCGCg -3' miRNA: 3'- -CGGUGGcAGCCaauGUAg-CCGU---UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 20476 | 0.7 | 0.687435 |
Target: 5'- aCCGCCGUCGaccucgacaccgcccGgcagcuCAUCGGCGACGg -3' miRNA: 3'- cGGUGGCAGC---------------Caau---GUAGCCGUUGCg -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 44245 | 0.7 | 0.693878 |
Target: 5'- cGCCGCCcgcgcgcgagaaGUCGGcgACAUCgaGGCcgAACGCc -3' miRNA: 3'- -CGGUGG------------CAGCCaaUGUAG--CCG--UUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 51133 | 0.7 | 0.693878 |
Target: 5'- aUCACCGUCGGgg----CGGCcaugAGCGCg -3' miRNA: 3'- cGGUGGCAGCCaauguaGCCG----UUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 61164 | 0.71 | 0.65064 |
Target: 5'- -aCACCGaCGGUgUACGccUCGGUAugGCc -3' miRNA: 3'- cgGUGGCaGCCA-AUGU--AGCCGUugCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 17348 | 0.71 | 0.639764 |
Target: 5'- cGUCGCCGUCG---AgGUCGGCGgcucgGCGCu -3' miRNA: 3'- -CGGUGGCAGCcaaUgUAGCCGU-----UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 26119 | 0.72 | 0.585466 |
Target: 5'- cGCCGCCGcCGGUcGC--CGGUccGACGCc -3' miRNA: 3'- -CGGUGGCaGCCAaUGuaGCCG--UUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 52769 | 0.72 | 0.585466 |
Target: 5'- --aGCuCGUCGGU---GUCGGCAGCGUg -3' miRNA: 3'- cggUG-GCAGCCAaugUAGCCGUUGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 23912 | 0.72 | 0.596284 |
Target: 5'- cCCGCCGUCGaaaUACAacggUCGGCAccaguacauguuGCGCa -3' miRNA: 3'- cGGUGGCAGCca-AUGU----AGCCGU------------UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 50751 | 0.72 | 0.616912 |
Target: 5'- aGCCGCCacgcgguGUCGGacgACAccUCGGCcuCGCg -3' miRNA: 3'- -CGGUGG-------CAGCCaa-UGU--AGCCGuuGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 28229 | 0.72 | 0.618 |
Target: 5'- cGCCACCGUCGG------CGGCGGgGUg -3' miRNA: 3'- -CGGUGGCAGCCaauguaGCCGUUgCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 34360 | 0.71 | 0.62888 |
Target: 5'- cCCACCGcCGGU---AUCGGCGcguaaccucgacGCGCa -3' miRNA: 3'- cGGUGGCaGCCAaugUAGCCGU------------UGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 46323 | 0.71 | 0.62888 |
Target: 5'- gGCC-CCGagGGUcGCGUCGcGCAcCGCu -3' miRNA: 3'- -CGGuGGCagCCAaUGUAGC-CGUuGCG- -5' |
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23228 | 5' | -52.9 | NC_005259.1 | + | 51659 | 0.71 | 0.639764 |
Target: 5'- gGUUGCCGcgCGGgcGCGUCGgGCAcggGCGCg -3' miRNA: 3'- -CGGUGGCa-GCCaaUGUAGC-CGU---UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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