miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23229 5' -56.5 NC_005259.1 + 26278 0.66 0.728793
Target:  5'- uGUCGCCgGUgccGCCCucgaCGGGuacGGGGAUCGa -3'
miRNA:   3'- gUAGUGGgCG---UGGG----GCCU---UCUCUAGC- -5'
23229 5' -56.5 NC_005259.1 + 7781 0.66 0.718463
Target:  5'- --cCGCCgaGCGCCCCGGcGGGGuuuUCu -3'
miRNA:   3'- guaGUGGg-CGUGGGGCCuUCUCu--AGc -5'
23229 5' -56.5 NC_005259.1 + 9817 0.66 0.708052
Target:  5'- --cCGCCCGCACCgCCGGGugcGGcgCu -3'
miRNA:   3'- guaGUGGGCGUGG-GGCCUuc-UCuaGc -5'
23229 5' -56.5 NC_005259.1 + 22215 0.67 0.63378
Target:  5'- --cCACCgCGCACCgCCGcGAGGcuGUCGg -3'
miRNA:   3'- guaGUGG-GCGUGG-GGC-CUUCucUAGC- -5'
23229 5' -56.5 NC_005259.1 + 55610 0.68 0.612403
Target:  5'- aCGUCuCgCGCGCCuuGGccGGGAUCa -3'
miRNA:   3'- -GUAGuGgGCGUGGggCCuuCUCUAGc -5'
23229 5' -56.5 NC_005259.1 + 18973 0.68 0.612403
Target:  5'- -cUCGCCgCGUACaucgCCCGGcacGAGAUCGg -3'
miRNA:   3'- guAGUGG-GCGUG----GGGCCuu-CUCUAGC- -5'
23229 5' -56.5 NC_005259.1 + 7027 0.68 0.601735
Target:  5'- --cCGCCgaGCGCCCCGGcGGGGuuuuUCGu -3'
miRNA:   3'- guaGUGGg-CGUGGGGCCuUCUCu---AGC- -5'
23229 5' -56.5 NC_005259.1 + 24630 0.68 0.601735
Target:  5'- uCAUCGgcauCCCGCACCCCGacGAcGAGAc-- -3'
miRNA:   3'- -GUAGU----GGGCGUGGGGC--CUuCUCUagc -5'
23229 5' -56.5 NC_005259.1 + 38811 0.68 0.591091
Target:  5'- gAUCGCCCGCGCCCgCGaugaccGAG-UCGa -3'
miRNA:   3'- gUAGUGGGCGUGGG-GCcuu---CUCuAGC- -5'
23229 5' -56.5 NC_005259.1 + 30370 0.69 0.528176
Target:  5'- gAUCuGCCCGCugCCCGGc-GAGAa-- -3'
miRNA:   3'- gUAG-UGGGCGugGGGCCuuCUCUagc -5'
23229 5' -56.5 NC_005259.1 + 49017 0.7 0.497633
Target:  5'- aCGUCuuccuCCCcCACCCCGGucGAG-UCGg -3'
miRNA:   3'- -GUAGu----GGGcGUGGGGCCuuCUCuAGC- -5'
23229 5' -56.5 NC_005259.1 + 5407 0.7 0.497633
Target:  5'- uCAUCACCCGCGCUggCCGccacGucGAGGUCu -3'
miRNA:   3'- -GUAGUGGGCGUGG--GGC----CuuCUCUAGc -5'
23229 5' -56.5 NC_005259.1 + 49844 0.7 0.487627
Target:  5'- aGUCAUCCGCACCCgaGGAucguuGGUCa -3'
miRNA:   3'- gUAGUGGGCGUGGGg-CCUucu--CUAGc -5'
23229 5' -56.5 NC_005259.1 + 561 0.72 0.39349
Target:  5'- -cUgACCCGCACCaCGGcguGGGGGUCGa -3'
miRNA:   3'- guAgUGGGCGUGGgGCCu--UCUCUAGC- -5'
23229 5' -56.5 NC_005259.1 + 20171 0.72 0.367629
Target:  5'- aCcgCGCCCGcCGCCUCGGcugacGAGAUCGc -3'
miRNA:   3'- -GuaGUGGGC-GUGGGGCCuu---CUCUAGC- -5'
23229 5' -56.5 NC_005259.1 + 53219 0.76 0.203975
Target:  5'- gCGUCGCCCGCGCCCUGcuuGAGGUUc -3'
miRNA:   3'- -GUAGUGGGCGUGGGGCcuuCUCUAGc -5'
23229 5' -56.5 NC_005259.1 + 29265 0.77 0.179029
Target:  5'- cCAUCGUCCGCGCCgUGGAcGAGAUCGc -3'
miRNA:   3'- -GUAGUGGGCGUGGgGCCUuCUCUAGC- -5'
23229 5' -56.5 NC_005259.1 + 48832 1.08 0.001368
Target:  5'- cCAUCACCCGCACCCCGGAAGAGAUCGc -3'
miRNA:   3'- -GUAGUGGGCGUGGGGCCUUCUCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.