miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 3' -57.3 NC_005259.1 + 42550 0.74 0.228155
Target:  5'- --gGUGgCGGGCAGCucgGCGAGcaGCCGGUc -3'
miRNA:   3'- uuaUACgGCCCGUCG---CGUUC--UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 49554 0.77 0.141199
Target:  5'- --aGUGCCGGGCuGUucgucggucgugGCcAGACCGGCg -3'
miRNA:   3'- uuaUACGGCCCGuCG------------CGuUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 44549 0.79 0.098506
Target:  5'- --cAUGCCGagaccggcaGGCAGCGCGccGACCGGCa -3'
miRNA:   3'- uuaUACGGC---------CCGUCGCGUu-CUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 45633 0.79 0.098506
Target:  5'- ----gGCCGGGCAGCGC---GCCGGUg -3'
miRNA:   3'- uuauaCGGCCCGUCGCGuucUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 52270 0.82 0.068212
Target:  5'- ----gGCCGGGCAGa-CAGGACCGGCc -3'
miRNA:   3'- uuauaCGGCCCGUCgcGUUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 58574 0.7 0.390927
Target:  5'- ----gGCCGGaucGCGGCGCGgcugccGGGCCGGa -3'
miRNA:   3'- uuauaCGGCC---CGUCGCGU------UCUGGCCg -5'
23230 3' -57.3 NC_005259.1 + 65346 0.7 0.406273
Target:  5'- -cUGUGCgCGGGCAcGuCGCAGGucaagaaauacgccACCGGUa -3'
miRNA:   3'- uuAUACG-GCCCGU-C-GCGUUC--------------UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 44411 0.68 0.517019
Target:  5'- --gGUGCCcgccugaccGGCAGCGCcGAuACCGGCc -3'
miRNA:   3'- uuaUACGGc--------CCGUCGCG-UUcUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 60386 0.68 0.506685
Target:  5'- ----cGCCGGaCAGCgGCGAGGCgaGGCc -3'
miRNA:   3'- uuauaCGGCCcGUCG-CGUUCUGg-CCG- -5'
23230 3' -57.3 NC_005259.1 + 44851 0.68 0.486288
Target:  5'- ----cGCCcGaGCAGuCGCucAGACCGGCg -3'
miRNA:   3'- uuauaCGGcC-CGUC-GCGu-UCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 34876 0.68 0.486288
Target:  5'- --gGUGCCggaccGGGguGCcucggGCAGGACgGGCc -3'
miRNA:   3'- uuaUACGG-----CCCguCG-----CGUUCUGgCCG- -5'
23230 3' -57.3 NC_005259.1 + 3693 0.68 0.476237
Target:  5'- ----cGCCGccCAGCuuGAGACCGGCg -3'
miRNA:   3'- uuauaCGGCccGUCGcgUUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 45184 0.69 0.437117
Target:  5'- ----cGCCGaGGuCAGCGCGGugauGACgGGCg -3'
miRNA:   3'- uuauaCGGC-CC-GUCGCGUU----CUGgCCG- -5'
23230 3' -57.3 NC_005259.1 + 24238 0.69 0.437117
Target:  5'- ----gGCCGaGGCA-CGCGAGuuCGGCg -3'
miRNA:   3'- uuauaCGGC-CCGUcGCGUUCugGCCG- -5'
23230 3' -57.3 NC_005259.1 + 28326 0.69 0.427627
Target:  5'- cGGUGUGCCGuccuuGGCGGCGaaauCGAGGCCacGGUg -3'
miRNA:   3'- -UUAUACGGC-----CCGUCGC----GUUCUGG--CCG- -5'
23230 3' -57.3 NC_005259.1 + 14542 0.69 0.427627
Target:  5'- --gGUGCCGaguucguccGGCAGgccgaGCgGGGACCGGCg -3'
miRNA:   3'- uuaUACGGC---------CCGUCg----CG-UUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 13282 0.69 0.427627
Target:  5'- cAUAUGUCGGGCaAGUauugacgugaGCcAGugCGGCg -3'
miRNA:   3'- uUAUACGGCCCG-UCG----------CGuUCugGCCG- -5'
23230 3' -57.3 NC_005259.1 + 2152 0.69 0.427627
Target:  5'- --gGUGCUGGccaGCGGCGuCGAGccGCCGGUu -3'
miRNA:   3'- uuaUACGGCC---CGUCGC-GUUC--UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 67428 0.69 0.418261
Target:  5'- --gGUGCCGGGCucacgcuugAGCGCGucggGGAugcccuuuUCGGCg -3'
miRNA:   3'- uuaUACGGCCCG---------UCGCGU----UCU--------GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 4273 0.69 0.417331
Target:  5'- ------aCGGGCGGCuGCGcugccacgagcacGGACCGGCg -3'
miRNA:   3'- uuauacgGCCCGUCG-CGU-------------UCUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.