miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 43654 0.68 0.662057
Target:  5'- --uCUGCGCCgACGGUGUcguUGccgaucacACCGCCg -3'
miRNA:   3'- cguGGCGCGGgUGCUACA---AC--------UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 3620 0.68 0.662057
Target:  5'- cUACCGCaacgGCUCGCuGAgc-UGACCACCa -3'
miRNA:   3'- cGUGGCG----CGGGUG-CUacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 55426 0.68 0.662057
Target:  5'- aGCACCGagccgacgaCGCCgACGAacgcGUacagGGCCACCc -3'
miRNA:   3'- -CGUGGC---------GCGGgUGCUa---CAa---CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 45300 0.68 0.662057
Target:  5'- uUACCGCGCCgGUGAcGccgaGGCCGCCg -3'
miRNA:   3'- cGUGGCGCGGgUGCUaCaa--CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 51719 0.69 0.597893
Target:  5'- -gACCGgacaagGCCCAC-AUGaUGGCCACCg -3'
miRNA:   3'- cgUGGCg-----CGGGUGcUACaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 3092 0.69 0.597893
Target:  5'- -aGCCGCGCa-GCGAUGagcgGGCgGCCa -3'
miRNA:   3'- cgUGGCGCGggUGCUACaa--CUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 20169 0.69 0.575573
Target:  5'- cCACCGCGCCCgccgccucggcugACGA----GAUCGCCg -3'
miRNA:   3'- cGUGGCGCGGG-------------UGCUacaaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 41676 0.69 0.576632
Target:  5'- uGCACCGCGU--GCG----UGGCCACCg -3'
miRNA:   3'- -CGUGGCGCGggUGCuacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 26170 0.69 0.587245
Target:  5'- uGC-CCGCGUCCuguGCGAucuccagaaUGUgcggcagcaUGGCCGCCg -3'
miRNA:   3'- -CGuGGCGCGGG---UGCU---------ACA---------ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 47927 0.69 0.5915
Target:  5'- uCGCCGagGCCCuggaagccgaugacgGCGGUGccgaUGGCCGCCg -3'
miRNA:   3'- cGUGGCg-CGGG---------------UGCUACa---ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 55227 0.69 0.596826
Target:  5'- aGCAUCGUguucgauGCCCACGAccuaUGUcggGGuCCACCc -3'
miRNA:   3'- -CGUGGCG-------CGGGUGCU----ACAa--CU-GGUGG- -5'
23230 5' -55.7 NC_005259.1 + 18870 0.69 0.608568
Target:  5'- gGUugCGCGCgugggaggccaaCCACGAUGUcGACC-UCg -3'
miRNA:   3'- -CGugGCGCG------------GGUGCUACAaCUGGuGG- -5'
23230 5' -55.7 NC_005259.1 + 35474 0.69 0.607499
Target:  5'- aGCACCGCccgguagGCCgaACGAUccuggGUUGGCC-CCg -3'
miRNA:   3'- -CGUGGCG-------CGGg-UGCUA-----CAACUGGuGG- -5'
23230 5' -55.7 NC_005259.1 + 55831 0.69 0.619262
Target:  5'- cCGCCGCGUCCuCGAcgcgUGUgGACUgaACCg -3'
miRNA:   3'- cGUGGCGCGGGuGCU----ACAaCUGG--UGG- -5'
23230 5' -55.7 NC_005259.1 + 35692 0.69 0.608568
Target:  5'- aCGCCGUGCCCGgCGAgggGUcgcUGAcgagguauCCGCCc -3'
miRNA:   3'- cGUGGCGCGGGU-GCUa--CA---ACU--------GGUGG- -5'
23230 5' -55.7 NC_005259.1 + 44377 0.69 0.612844
Target:  5'- uCGCCacacCGCCCAUGAUGUcgccgagcacgucggUGcCCGCCu -3'
miRNA:   3'- cGUGGc---GCGGGUGCUACA---------------ACuGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 26969 0.69 0.619262
Target:  5'- aGCGCCGUGCCgaacucgGCGGUGUaGACguUCg -3'
miRNA:   3'- -CGUGGCGCGGg------UGCUACAaCUGguGG- -5'
23230 5' -55.7 NC_005259.1 + 42223 0.69 0.608568
Target:  5'- cGCGCCGcCGUCCcCGGccaucucGACCACCu -3'
miRNA:   3'- -CGUGGC-GCGGGuGCUacaa---CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 8142 0.69 0.619262
Target:  5'- uGCcCCGCGCCCuCGuUGcucUGGCCAUg -3'
miRNA:   3'- -CGuGGCGCGGGuGCuACa--ACUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 14723 0.69 0.619262
Target:  5'- aCGCCGCGCUCGucgccgaGAUGUacgcgcUGGCCggGCCg -3'
miRNA:   3'- cGUGGCGCGGGUg------CUACA------ACUGG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.