Results 121 - 140 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 36949 | 0.72 | 0.444971 |
Target: 5'- uCACCgggGUGCCCGCGA----GACCGCCu -3' miRNA: 3'- cGUGG---CGCGGGUGCUacaaCUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 13967 | 0.72 | 0.448785 |
Target: 5'- gGCAucCCGagGCCCGCGAUGcUUgagaucugggacaaaGACCACCu -3' miRNA: 3'- -CGU--GGCg-CGGGUGCUAC-AA---------------CUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 7946 | 0.73 | 0.39006 |
Target: 5'- cUugCGCGCCCACGGcUGcUUGGuggcccacgcCCACCg -3' miRNA: 3'- cGugGCGCGGGUGCU-AC-AACU----------GGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 19863 | 0.73 | 0.39006 |
Target: 5'- gGCGCuCGCGCCCGCcGg---GAUCGCCg -3' miRNA: 3'- -CGUG-GCGCGGGUGcUacaaCUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 60814 | 0.73 | 0.39006 |
Target: 5'- -gGCCGgaaauCGUCgGCGAUGcUGGCCACCa -3' miRNA: 3'- cgUGGC-----GCGGgUGCUACaACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 46342 | 0.73 | 0.398902 |
Target: 5'- cGCACCGCuuguagguucugGgCCGCGAUGgc-ACCGCCc -3' miRNA: 3'- -CGUGGCG------------CgGGUGCUACaacUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 49638 | 0.73 | 0.356001 |
Target: 5'- gGCAgCCGCGUCgGCGAUGgcGGCCucgauacgcGCCu -3' miRNA: 3'- -CGU-GGCGCGGgUGCUACaaCUGG---------UGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 9397 | 0.74 | 0.31645 |
Target: 5'- cGCACgCGCGCCC-CGGUacggGugCGCCa -3' miRNA: 3'- -CGUG-GCGCGGGuGCUAcaa-CugGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 52215 | 0.74 | 0.324088 |
Target: 5'- gGCACCGCGuUCCGCGcccGcUGAUCACCc -3' miRNA: 3'- -CGUGGCGC-GGGUGCua-CaACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 64755 | 0.75 | 0.294355 |
Target: 5'- cCACCGCGCCuCGCGAcg--GugCGCCu -3' miRNA: 3'- cGUGGCGCGG-GUGCUacaaCugGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 31825 | 0.75 | 0.311933 |
Target: 5'- cCACCGCGCCCGCGucgaucuucucgcGcgUGACCGCg -3' miRNA: 3'- cGUGGCGCGGGUGCua-----------Ca-ACUGGUGg -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 43287 | 0.75 | 0.308949 |
Target: 5'- aGCGCCcgccgccgacGCGCCCGCcuGAauggcugcGUUGGCCACCg -3' miRNA: 3'- -CGUGG----------CGCGGGUG--CUa-------CAACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 43933 | 0.75 | 0.305987 |
Target: 5'- aCACCGCGCUacugacagcgucgGCGAUGggcggGGCCGCCg -3' miRNA: 3'- cGUGGCGCGGg------------UGCUACaa---CUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 22176 | 0.75 | 0.304514 |
Target: 5'- aCAgCGCGCCCAucgUGGUugcgaccuugcagacGUUGGCCACCg -3' miRNA: 3'- cGUgGCGCGGGU---GCUA---------------CAACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 64636 | 0.75 | 0.301584 |
Target: 5'- aGCGCCcaccaaucgaGCGUCCACGAguauUUGAUCACCc -3' miRNA: 3'- -CGUGG----------CGCGGGUGCUac--AACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 22457 | 0.75 | 0.294355 |
Target: 5'- gGCuACCucguGCGCCCGCGcgGUcUGACCGuCCg -3' miRNA: 3'- -CG-UGG----CGCGGGUGCuaCA-ACUGGU-GG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 36630 | 0.75 | 0.28656 |
Target: 5'- cGCGCCGCccgcaagGCCCGCGAUcagcgaGCCGCCg -3' miRNA: 3'- -CGUGGCG-------CGGGUGCUAcaac--UGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 62822 | 0.76 | 0.251277 |
Target: 5'- aGCGCCGCuuGCCCGCGAggucgagcgcgcgGUUGACgagcaGCCg -3' miRNA: 3'- -CGUGGCG--CGGGUGCUa------------CAACUGg----UGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 14282 | 0.76 | 0.266792 |
Target: 5'- aCACCGCcuGCCCAaccacCGAUGUcggugcguaUGGCCGCCc -3' miRNA: 3'- cGUGGCG--CGGGU-----GCUACA---------ACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 46946 | 0.76 | 0.260235 |
Target: 5'- cGCGCCGCcgaCCGCGuugagcuUGUUGGCCACg -3' miRNA: 3'- -CGUGGCGcg-GGUGCu------ACAACUGGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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