miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 29996 0.72 0.416964
Target:  5'- cGCACgGUGgucaCCACGAcaaggUGACCACCg -3'
miRNA:   3'- -CGUGgCGCg---GGUGCUaca--ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 38852 0.72 0.411493
Target:  5'- aGCGCguucucgauguucgaCGCGCCCgcaaugGCGGUGUUGACgACg -3'
miRNA:   3'- -CGUG---------------GCGCGGG------UGCUACAACUGgUGg -5'
23230 5' -55.7 NC_005259.1 + 39877 0.72 0.40787
Target:  5'- -aGCUGCGCCCAcacCGAaucGUUGucGCCGCCg -3'
miRNA:   3'- cgUGGCGCGGGU---GCUa--CAAC--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 19262 0.72 0.40787
Target:  5'- -uGCCGgGCCgCcCGAUGgaagucaUGACCACCa -3'
miRNA:   3'- cgUGGCgCGG-GuGCUACa------ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 25962 0.71 0.492869
Target:  5'- cCGCCGaCGCCUGCGAUGa-GACCgggcagcGCCg -3'
miRNA:   3'- cGUGGC-GCGGGUGCUACaaCUGG-------UGG- -5'
23230 5' -55.7 NC_005259.1 + 27744 0.71 0.493872
Target:  5'- cCGCUGCuGCCCACGGUGc--AUCGCCc -3'
miRNA:   3'- cGUGGCG-CGGGUGCUACaacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 28835 0.71 0.493872
Target:  5'- gGCACCGCGuUCUACaaaGUcGACCGCCc -3'
miRNA:   3'- -CGUGGCGC-GGGUGcuaCAaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 26799 0.71 0.50395
Target:  5'- aGCGCCGcCGCCCg----GUUGGCCgguACCg -3'
miRNA:   3'- -CGUGGC-GCGGGugcuaCAACUGG---UGG- -5'
23230 5' -55.7 NC_005259.1 + 59385 0.71 0.50395
Target:  5'- cGCACCGUGCCUccgcgcGCGAgcgUGACC-UCg -3'
miRNA:   3'- -CGUGGCGCGGG------UGCUacaACUGGuGG- -5'
23230 5' -55.7 NC_005259.1 + 12293 0.71 0.48787
Target:  5'- cCGCCGCGCCU-CGAUGcgGgcaaugucggugcgcACCGCCg -3'
miRNA:   3'- cGUGGCGCGGGuGCUACaaC---------------UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 36730 0.71 0.483887
Target:  5'- cCGCCGCGCCCGCcggGAUacgUGAUC-CCg -3'
miRNA:   3'- cGUGGCGCGGGUG---CUAca-ACUGGuGG- -5'
23230 5' -55.7 NC_005259.1 + 45788 0.71 0.454539
Target:  5'- aGCACCGCGUUgACGGUGU---CCugCu -3'
miRNA:   3'- -CGUGGCGCGGgUGCUACAacuGGugG- -5'
23230 5' -55.7 NC_005259.1 + 8819 0.71 0.474001
Target:  5'- cGCGCCGgGCCgGUGA-GUUGACgCGCUg -3'
miRNA:   3'- -CGUGGCgCGGgUGCUaCAACUG-GUGG- -5'
23230 5' -55.7 NC_005259.1 + 46177 0.71 0.474001
Target:  5'- cCGCCGgGCgCGuCGAUGUUGAUgggCACCu -3'
miRNA:   3'- cGUGGCgCGgGU-GCUACAACUG---GUGG- -5'
23230 5' -55.7 NC_005259.1 + 28070 0.71 0.483887
Target:  5'- cCugC-CGCCaCACGGUGggGugCACCu -3'
miRNA:   3'- cGugGcGCGG-GUGCUACaaCugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 35836 0.71 0.483887
Target:  5'- -aGCCGCcaccGCCCGCGAgcacagGUccGCCGCCg -3'
miRNA:   3'- cgUGGCG----CGGGUGCUa-----CAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 36881 0.7 0.514115
Target:  5'- cGC-CCGCGCCgACGAcGccggUGAgCGCCc -3'
miRNA:   3'- -CGuGGCGCGGgUGCUaCa---ACUgGUGG- -5'
23230 5' -55.7 NC_005259.1 + 53223 0.7 0.514115
Target:  5'- cGC-CCGCGCCCugcuUGAgGUUcgcGCCGCCg -3'
miRNA:   3'- -CGuGGCGCGGGu---GCUaCAAc--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 27530 0.7 0.524364
Target:  5'- aCGCCGUcgagGcCCCACGGcgggaUGUUGcgGCCACCg -3'
miRNA:   3'- cGUGGCG----C-GGGUGCU-----ACAAC--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 31639 0.7 0.524364
Target:  5'- uGUACUGCG-CCACGGucaUGUaGACCugCu -3'
miRNA:   3'- -CGUGGCGCgGGUGCU---ACAaCUGGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.