miRNA display CGI


Results 101 - 120 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 46799 0.68 0.657787
Target:  5'- aCACCGaGCCUGCGAgcgcaccaccGGCCACCu -3'
miRNA:   3'- cGUGGCgCGGGUGCUacaa------CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 415 0.68 0.651375
Target:  5'- aGCG-CGUGCCCGuCGAgGaUGACgCACCg -3'
miRNA:   3'- -CGUgGCGCGGGU-GCUaCaACUG-GUGG- -5'
23230 5' -55.7 NC_005259.1 + 8574 0.68 0.627826
Target:  5'- aGCACCGCcaccGCCCACGcacgauccGGCgGCCu -3'
miRNA:   3'- -CGUGGCG----CGGGUGCuacaa---CUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 17732 0.68 0.628897
Target:  5'- cGCACCGUGgCUgcucgacGCGAUccGUgaGGCCGCCg -3'
miRNA:   3'- -CGUGGCGCgGG-------UGCUA--CAa-CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 20261 0.68 0.629968
Target:  5'- aCGCCGCGCCgGgcCGAUGgaucgUGgacgcGCUACCg -3'
miRNA:   3'- cGUGGCGCGGgU--GCUACa----AC-----UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 66221 0.68 0.629968
Target:  5'- cGCGCCGaCGCacaCGCGGUcGUgcaGCCAUCg -3'
miRNA:   3'- -CGUGGC-GCGg--GUGCUA-CAac-UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 52601 0.68 0.640675
Target:  5'- aGCACCaGCGCCgUACGGUGgccaACUACg -3'
miRNA:   3'- -CGUGG-CGCGG-GUGCUACaac-UGGUGg -5'
23230 5' -55.7 NC_005259.1 + 67968 0.68 0.640675
Target:  5'- uGUAgCGCGCgCAgCGgcG-UGGCCACCg -3'
miRNA:   3'- -CGUgGCGCGgGU-GCuaCaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 48398 0.68 0.640675
Target:  5'- cCGCCGaCGCCCGCcgucGAgucaccgcGACCGCCa -3'
miRNA:   3'- cGUGGC-GCGGGUG----CUacaa----CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 40558 0.68 0.644956
Target:  5'- -gACgCGCGCCCgcGCGGUGUUGcugucggcggcucgcACCAgCa -3'
miRNA:   3'- cgUG-GCGCGGG--UGCUACAAC---------------UGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 16583 0.67 0.717998
Target:  5'- uCGCCGaggacauCGCCCGCGAggccaucggacUGUUcaacgggccgaggcaGGCCACCu -3'
miRNA:   3'- cGUGGC-------GCGGGUGCU-----------ACAA---------------CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 40851 0.67 0.714877
Target:  5'- uGCcCUGCGCCU-CGAccaUGGCCGCCc -3'
miRNA:   3'- -CGuGGCGCGGGuGCUacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 68064 0.67 0.704426
Target:  5'- aGCA-CGCGCUCAauCGAUGUgcUGAUCAgCu -3'
miRNA:   3'- -CGUgGCGCGGGU--GCUACA--ACUGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 3978 0.67 0.693909
Target:  5'- aGCGgucCCGCGagcaCGCGAUGgcgGGCCGCg -3'
miRNA:   3'- -CGU---GGCGCgg--GUGCUACaa-CUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 45662 0.67 0.693909
Target:  5'- aCACCGcCGUCCGCGuaGU--ACCGCCu -3'
miRNA:   3'- cGUGGC-GCGGGUGCuaCAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 37164 0.67 0.693909
Target:  5'- cCGCCGCGCCCGcCGAc----GCCGCg -3'
miRNA:   3'- cGUGGCGCGGGU-GCUacaacUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 53180 0.67 0.693909
Target:  5'- cCACCGcCGCCCgucGCGGUGUccccGGCgAUCa -3'
miRNA:   3'- cGUGGC-GCGGG---UGCUACAa---CUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 42494 0.67 0.693909
Target:  5'- -aGCCGUGaCCCguccgGCGGUG-UGGCCAgCa -3'
miRNA:   3'- cgUGGCGC-GGG-----UGCUACaACUGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 30524 0.67 0.693909
Target:  5'- aGCucuuuaGCGCCCugcAUGAUcaUGGCCACCg -3'
miRNA:   3'- -CGugg---CGCGGG---UGCUAcaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 31406 0.67 0.725251
Target:  5'- aGCACaGCGCCC-CGAgGUc-GCCGCUg -3'
miRNA:   3'- -CGUGgCGCGGGuGCUaCAacUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.