miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 31639 0.7 0.524364
Target:  5'- uGUACUGCG-CCACGGucaUGUaGACCugCu -3'
miRNA:   3'- -CGUGGCGCgGGUGCU---ACAaCUGGugG- -5'
23230 5' -55.7 NC_005259.1 + 27530 0.7 0.524364
Target:  5'- aCGCCGUcgagGcCCCACGGcgggaUGUUGcgGCCACCg -3'
miRNA:   3'- cGUGGCG----C-GGGUGCU-----ACAAC--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 17897 0.7 0.538839
Target:  5'- cGCACCGCGCgCCgAUGcGUGUggaugcccggucugGACCGCg -3'
miRNA:   3'- -CGUGGCGCG-GG-UGC-UACAa-------------CUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 50051 0.7 0.545085
Target:  5'- aCACCGC-CCCGCacgcgaaacggGGUGUaGACCugCg -3'
miRNA:   3'- cGUGGCGcGGGUG-----------CUACAaCUGGugG- -5'
23230 5' -55.7 NC_005259.1 + 26497 0.7 0.555546
Target:  5'- aCGCCGCgagcucgccGCCCggcgagaagagcGCGGUGagcagcUUGGCCACCa -3'
miRNA:   3'- cGUGGCG---------CGGG------------UGCUAC------AACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 11859 0.7 0.555546
Target:  5'- cCACC-CGUCgGCGAacgUGACCGCCg -3'
miRNA:   3'- cGUGGcGCGGgUGCUacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 4423 0.7 0.555546
Target:  5'- cCACCGCGCgCC-CGAgGUcGAgCCGCCc -3'
miRNA:   3'- cGUGGCGCG-GGuGCUaCAaCU-GGUGG- -5'
23230 5' -55.7 NC_005259.1 + 59508 0.7 0.555546
Target:  5'- uCACCGC-CCgGCGAauugcUGUUGGCCuuagcGCCg -3'
miRNA:   3'- cGUGGCGcGGgUGCU-----ACAACUGG-----UGG- -5'
23230 5' -55.7 NC_005259.1 + 57925 0.7 0.555546
Target:  5'- cGCgACCaGUGCCaGCGA-GUUGAgCACCg -3'
miRNA:   3'- -CG-UGG-CGCGGgUGCUaCAACUgGUGG- -5'
23230 5' -55.7 NC_005259.1 + 35796 0.7 0.565009
Target:  5'- aCGCCGCGCCUcaacaggACGGUGccguacGACC-CCg -3'
miRNA:   3'- cGUGGCGCGGG-------UGCUACaa----CUGGuGG- -5'
23230 5' -55.7 NC_005259.1 + 31765 0.7 0.566064
Target:  5'- cCACCGC-CCCGucauCGAUGUgcugcgccuUGACCGCg -3'
miRNA:   3'- cGUGGCGcGGGU----GCUACA---------ACUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 64015 0.7 0.566064
Target:  5'- cCACCGCGCCCgaggcgcgGCGAggccggUGACCGg- -3'
miRNA:   3'- cGUGGCGCGGG--------UGCUaca---ACUGGUgg -5'
23230 5' -55.7 NC_005259.1 + 53719 0.7 0.566064
Target:  5'- uCACCGCGCCgcUGAUGgUGAugUCGCCg -3'
miRNA:   3'- cGUGGCGCGGguGCUACaACU--GGUGG- -5'
23230 5' -55.7 NC_005259.1 + 13135 0.7 0.566064
Target:  5'- cGCACgGUGUUCGgcuCGAUcaUGGCCACCa -3'
miRNA:   3'- -CGUGgCGCGGGU---GCUAcaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 12135 0.7 0.566064
Target:  5'- aGCACCGgGUCUGCuuUcUUGAUCACCg -3'
miRNA:   3'- -CGUGGCgCGGGUGcuAcAACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 20169 0.69 0.575573
Target:  5'- cCACCGCGCCCgccgccucggcugACGA----GAUCGCCg -3'
miRNA:   3'- cGUGGCGCGGG-------------UGCUacaaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 41676 0.69 0.576632
Target:  5'- uGCACCGCGU--GCG----UGGCCACCg -3'
miRNA:   3'- -CGUGGCGCGggUGCuacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 26170 0.69 0.587245
Target:  5'- uGC-CCGCGUCCuguGCGAucuccagaaUGUgcggcagcaUGGCCGCCg -3'
miRNA:   3'- -CGuGGCGCGGG---UGCU---------ACA---------ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 47927 0.69 0.5915
Target:  5'- uCGCCGagGCCCuggaagccgaugacgGCGGUGccgaUGGCCGCCg -3'
miRNA:   3'- cGUGGCg-CGGG---------------UGCUACa---ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 55227 0.69 0.596826
Target:  5'- aGCAUCGUguucgauGCCCACGAccuaUGUcggGGuCCACCc -3'
miRNA:   3'- -CGUGGCG-------CGGGUGCU----ACAa--CU-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.