miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 37509 0.66 0.765762
Target:  5'- aGCACgaUGCuGCCCgACGAgaagaucGUcgGGCCGCCg -3'
miRNA:   3'- -CGUG--GCG-CGGG-UGCUa------CAa-CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 37652 0.66 0.785279
Target:  5'- cGCACCGcCGCCgC-CGccgGU--GCCGCCa -3'
miRNA:   3'- -CGUGGC-GCGG-GuGCua-CAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 37730 0.72 0.435517
Target:  5'- gGCACCGcCGCCgACGAgcUGcucgaUGACCAgCg -3'
miRNA:   3'- -CGUGGC-GCGGgUGCU--ACa----ACUGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 38814 0.81 0.121548
Target:  5'- cGC-CCGCGCCCGCGAUGaccgagucgaUGGCCugCu -3'
miRNA:   3'- -CGuGGCGCGGGUGCUACa---------ACUGGugG- -5'
23230 5' -55.7 NC_005259.1 + 38852 0.72 0.411493
Target:  5'- aGCGCguucucgauguucgaCGCGCCCgcaaugGCGGUGUUGACgACg -3'
miRNA:   3'- -CGUG---------------GCGCGGG------UGCUACAACUGgUGg -5'
23230 5' -55.7 NC_005259.1 + 39877 0.72 0.40787
Target:  5'- -aGCUGCGCCCAcacCGAaucGUUGucGCCGCCg -3'
miRNA:   3'- cgUGGCGCGGGU---GCUa--CAAC--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 40470 0.66 0.765762
Target:  5'- cGUACUGCcgGgCCGCGcgGUUGACguuggaCACCc -3'
miRNA:   3'- -CGUGGCG--CgGGUGCuaCAACUG------GUGG- -5'
23230 5' -55.7 NC_005259.1 + 40558 0.68 0.644956
Target:  5'- -gACgCGCGCCCgcGCGGUGUUGcugucggcggcucgcACCAgCa -3'
miRNA:   3'- cgUG-GCGCGGG--UGCUACAAC---------------UGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 40851 0.67 0.714877
Target:  5'- uGCcCUGCGCCU-CGAccaUGGCCGCCc -3'
miRNA:   3'- -CGuGGCGCGGGuGCUacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 41405 0.91 0.024292
Target:  5'- cGCGCCGCucgggguGCCCACGAUGUgcacgGGCCGCCa -3'
miRNA:   3'- -CGUGGCG-------CGGGUGCUACAa----CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 41676 0.69 0.576632
Target:  5'- uGCACCGCGU--GCG----UGGCCACCg -3'
miRNA:   3'- -CGUGGCGCGggUGCuacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 42141 0.66 0.775591
Target:  5'- cGUACguCGCGCCCGCGuug--GugCACg -3'
miRNA:   3'- -CGUG--GCGCGGGUGCuacaaCugGUGg -5'
23230 5' -55.7 NC_005259.1 + 42194 0.78 0.186544
Target:  5'- cGCugCGCGCCguCGCGAUGgaUGcCCGCCg -3'
miRNA:   3'- -CGugGCGCGG--GUGCUACa-ACuGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 42223 0.69 0.608568
Target:  5'- cGCGCCGcCGUCCcCGGccaucucGACCACCu -3'
miRNA:   3'- -CGUGGC-GCGGGuGCUacaa---CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 42494 0.67 0.693909
Target:  5'- -aGCCGUGaCCCguccgGCGGUG-UGGCCAgCa -3'
miRNA:   3'- cgUGGCGC-GGG-----UGCUACaACUGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 42641 0.72 0.435517
Target:  5'- gGCACCuCgGCCC-CGAUGUgGGCgGCCa -3'
miRNA:   3'- -CGUGGcG-CGGGuGCUACAaCUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 43260 0.66 0.765762
Target:  5'- cGCGCCggGUGCCUGaGA-GUUGACCGCn -3'
miRNA:   3'- -CGUGG--CGCGGGUgCUaCAACUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 43287 0.75 0.308949
Target:  5'- aGCGCCcgccgccgacGCGCCCGCcuGAauggcugcGUUGGCCACCg -3'
miRNA:   3'- -CGUGG----------CGCGGGUG--CUa-------CAACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 43654 0.68 0.662057
Target:  5'- --uCUGCGCCgACGGUGUcguUGccgaucacACCGCCg -3'
miRNA:   3'- cguGGCGCGGgUGCUACA---AC--------UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 43933 0.75 0.305987
Target:  5'- aCACCGCGCUacugacagcgucgGCGAUGggcggGGCCGCCg -3'
miRNA:   3'- cGUGGCGCGGg------------UGCUACaa---CUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.