miRNA display CGI


Results 101 - 120 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 44377 0.69 0.612844
Target:  5'- uCGCCacacCGCCCAUGAUGUcgccgagcacgucggUGcCCGCCu -3'
miRNA:   3'- cGUGGc---GCGGGUGCUACA---------------ACuGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 44570 0.67 0.735537
Target:  5'- cGCGCCGaccggcagGCUCAUGAUGUUcGGCaUGCCc -3'
miRNA:   3'- -CGUGGCg-------CGGGUGCUACAA-CUG-GUGG- -5'
23230 5' -55.7 NC_005259.1 + 44733 0.68 0.672714
Target:  5'- gGCAgCGCGCCCuCGAccgcgccgaggcUcUUGAgCACCg -3'
miRNA:   3'- -CGUgGCGCGGGuGCU------------AcAACUgGUGG- -5'
23230 5' -55.7 NC_005259.1 + 44876 0.7 0.513095
Target:  5'- gGCGagauccgaCGCGcCCCACGAguauuuuccgcgcUGUgGGCCGCCg -3'
miRNA:   3'- -CGUg-------GCGC-GGGUGCU-------------ACAaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 45177 0.66 0.794817
Target:  5'- uGUugCGCGCCgaggucagCGCGGUGaUGACgGgCg -3'
miRNA:   3'- -CGugGCGCGG--------GUGCUACaACUGgUgG- -5'
23230 5' -55.7 NC_005259.1 + 45300 0.68 0.662057
Target:  5'- uUACCGCGCCgGUGAcGccgaGGCCGCCg -3'
miRNA:   3'- cGUGGCGCGGgUGCUaCaa--CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 45401 0.66 0.794817
Target:  5'- uCGCCGcCGagCGCGcUGaUGGCCGCCg -3'
miRNA:   3'- cGUGGC-GCggGUGCuACaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 45516 0.83 0.092323
Target:  5'- cCACCGCGCC---GGUGUUGGCCGCCg -3'
miRNA:   3'- cGUGGCGCGGgugCUACAACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 45662 0.67 0.693909
Target:  5'- aCACCGcCGUCCGCGuaGU--ACCGCCu -3'
miRNA:   3'- cGUGGC-GCGGGUGCuaCAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 45788 0.71 0.454539
Target:  5'- aGCACCGCGUUgACGGUGU---CCugCu -3'
miRNA:   3'- -CGUGGCGCGGgUGCUACAacuGGugG- -5'
23230 5' -55.7 NC_005259.1 + 46177 0.71 0.474001
Target:  5'- cCGCCGgGCgCGuCGAUGUUGAUgggCACCu -3'
miRNA:   3'- cGUGGCgCGgGU-GCUACAACUG---GUGG- -5'
23230 5' -55.7 NC_005259.1 + 46342 0.73 0.398902
Target:  5'- cGCACCGCuuguagguucugGgCCGCGAUGgc-ACCGCCc -3'
miRNA:   3'- -CGUGGCG------------CgGGUGCUACaacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 46560 0.72 0.416964
Target:  5'- -gACCGCGCCUAUGGUcgcggcGUcGACCGCg -3'
miRNA:   3'- cgUGGCGCGGGUGCUA------CAaCUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 46799 0.68 0.657787
Target:  5'- aCACCGaGCCUGCGAgcgcaccaccGGCCACCu -3'
miRNA:   3'- cGUGGCgCGGGUGCUacaa------CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 46884 0.84 0.071832
Target:  5'- cGCGCCGcCGCCCGCGAUGagcGcCCGCCg -3'
miRNA:   3'- -CGUGGC-GCGGGUGCUACaa-CuGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 46946 0.76 0.260235
Target:  5'- cGCGCCGCcgaCCGCGuugagcuUGUUGGCCACg -3'
miRNA:   3'- -CGUGGCGcg-GGUGCu------ACAACUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 47572 0.66 0.755803
Target:  5'- cGCGCUGCuGUCCcucgGCGGUGUUG-CCGa- -3'
miRNA:   3'- -CGUGGCG-CGGG----UGCUACAACuGGUgg -5'
23230 5' -55.7 NC_005259.1 + 47662 0.66 0.794817
Target:  5'- ---aCGUGCUguUGAUGgccuUGGCCACCu -3'
miRNA:   3'- cgugGCGCGGguGCUACa---ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 47927 0.69 0.5915
Target:  5'- uCGCCGagGCCCuggaagccgaugacgGCGGUGccgaUGGCCGCCg -3'
miRNA:   3'- cGUGGCg-CGGG---------------UGCUACa---ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 48023 1.13 0.000772
Target:  5'- uGCACCGCGCCCACGAUGUUGACCACCc -3'
miRNA:   3'- -CGUGGCGCGGGUGCUACAACUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.