miRNA display CGI


Results 121 - 140 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 48072 0.76 0.253811
Target:  5'- cCGCCGCGCCCugagcgAUGGUGUUGAgC-CCg -3'
miRNA:   3'- cGUGGCGCGGG------UGCUACAACUgGuGG- -5'
23230 5' -55.7 NC_005259.1 + 48398 0.68 0.640675
Target:  5'- cCGCCGaCGCCCGCcgucGAgucaccgcGACCGCCa -3'
miRNA:   3'- cGUGGC-GCGGGUG----CUacaa----CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 49638 0.73 0.356001
Target:  5'- gGCAgCCGCGUCgGCGAUGgcGGCCucgauacgcGCCu -3'
miRNA:   3'- -CGU-GGCGCGGgUGCUACaaCUGG---------UGG- -5'
23230 5' -55.7 NC_005259.1 + 50051 0.7 0.545085
Target:  5'- aCACCGC-CCCGCacgcgaaacggGGUGUaGACCugCg -3'
miRNA:   3'- cGUGGCGcGGGUG-----------CUACAaCUGGugG- -5'
23230 5' -55.7 NC_005259.1 + 50129 0.66 0.765762
Target:  5'- gGCACCGC-CacaCGCGAUugGUUGGCgAUCc -3'
miRNA:   3'- -CGUGGCGcGg--GUGCUA--CAACUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 51719 0.69 0.597893
Target:  5'- -gACCGgacaagGCCCAC-AUGaUGGCCACCg -3'
miRNA:   3'- cgUGGCg-----CGGGUGcUACaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 52164 0.66 0.775591
Target:  5'- aGCGCCgagGCGCUCAUGcagcagGACCGCg -3'
miRNA:   3'- -CGUGG---CGCGGGUGCuacaa-CUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 52215 0.74 0.324088
Target:  5'- gGCACCGCGuUCCGCGcccGcUGAUCACCc -3'
miRNA:   3'- -CGUGGCGC-GGGUGCua-CaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 52536 0.66 0.793871
Target:  5'- -gGCCGCGCCCcaagauuggauguGCGAgcccgacaugGUcGACCggACCg -3'
miRNA:   3'- cgUGGCGCGGG-------------UGCUa---------CAaCUGG--UGG- -5'
23230 5' -55.7 NC_005259.1 + 52601 0.68 0.640675
Target:  5'- aGCACCaGCGCCgUACGGUGgccaACUACg -3'
miRNA:   3'- -CGUGG-CGCGG-GUGCUACaac-UGGUGg -5'
23230 5' -55.7 NC_005259.1 + 53180 0.67 0.693909
Target:  5'- cCACCGcCGCCCgucGCGGUGUccccGGCgAUCa -3'
miRNA:   3'- cGUGGC-GCGGG---UGCUACAa---CUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 53223 0.7 0.514115
Target:  5'- cGC-CCGCGCCCugcuUGAgGUUcgcGCCGCCg -3'
miRNA:   3'- -CGuGGCGCGGGu---GCUaCAAc--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 53719 0.7 0.566064
Target:  5'- uCACCGCGCCgcUGAUGgUGAugUCGCCg -3'
miRNA:   3'- cGUGGCGCGGguGCUACaACU--GGUGG- -5'
23230 5' -55.7 NC_005259.1 + 55227 0.69 0.596826
Target:  5'- aGCAUCGUguucgauGCCCACGAccuaUGUcggGGuCCACCc -3'
miRNA:   3'- -CGUGGCG-------CGGGUGCU----ACAa--CU-GGUGG- -5'
23230 5' -55.7 NC_005259.1 + 55426 0.68 0.662057
Target:  5'- aGCACCGagccgacgaCGCCgACGAacgcGUacagGGCCACCc -3'
miRNA:   3'- -CGUGGC---------GCGGgUGCUa---CAa---CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 55831 0.69 0.619262
Target:  5'- cCGCCGCGUCCuCGAcgcgUGUgGACUgaACCg -3'
miRNA:   3'- cGUGGCGCGGGuGCU----ACAaCUGG--UGG- -5'
23230 5' -55.7 NC_005259.1 + 56661 0.81 0.121548
Target:  5'- gGCACCGCGCgUCACGGgcucGUUGcGCCACCc -3'
miRNA:   3'- -CGUGGCGCG-GGUGCUa---CAAC-UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 57742 0.66 0.755803
Target:  5'- cGUACUGCaa-CGCGAUGUUGcgaGCCGCg -3'
miRNA:   3'- -CGUGGCGcggGUGCUACAAC---UGGUGg -5'
23230 5' -55.7 NC_005259.1 + 57925 0.7 0.555546
Target:  5'- cGCgACCaGUGCCaGCGA-GUUGAgCACCg -3'
miRNA:   3'- -CG-UGG-CGCGGgUGCUaCAACUgGUGG- -5'
23230 5' -55.7 NC_005259.1 + 59385 0.71 0.50395
Target:  5'- cGCACCGUGCCUccgcgcGCGAgcgUGACC-UCg -3'
miRNA:   3'- -CGUGGCGCGGG------UGCUacaACUGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.