Results 61 - 80 of 156 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 42641 | 0.72 | 0.435517 |
Target: 5'- gGCACCuCgGCCC-CGAUGUgGGCgGCCa -3' miRNA: 3'- -CGUGGcG-CGGGuGCUACAaCUGgUGG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 42494 | 0.67 | 0.693909 |
Target: 5'- -aGCCGUGaCCCguccgGCGGUG-UGGCCAgCa -3' miRNA: 3'- cgUGGCGC-GGG-----UGCUACaACUGGUgG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 42223 | 0.69 | 0.608568 |
Target: 5'- cGCGCCGcCGUCCcCGGccaucucGACCACCu -3' miRNA: 3'- -CGUGGC-GCGGGuGCUacaa---CUGGUGG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 42194 | 0.78 | 0.186544 |
Target: 5'- cGCugCGCGCCguCGCGAUGgaUGcCCGCCg -3' miRNA: 3'- -CGugGCGCGG--GUGCUACa-ACuGGUGG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 42141 | 0.66 | 0.775591 |
Target: 5'- cGUACguCGCGCCCGCGuug--GugCACg -3' miRNA: 3'- -CGUG--GCGCGGGUGCuacaaCugGUGg -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 41676 | 0.69 | 0.576632 |
Target: 5'- uGCACCGCGU--GCG----UGGCCACCg -3' miRNA: 3'- -CGUGGCGCGggUGCuacaACUGGUGG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 41405 | 0.91 | 0.024292 |
Target: 5'- cGCGCCGCucgggguGCCCACGAUGUgcacgGGCCGCCa -3' miRNA: 3'- -CGUGGCG-------CGGGUGCUACAa----CUGGUGG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 40851 | 0.67 | 0.714877 |
Target: 5'- uGCcCUGCGCCU-CGAccaUGGCCGCCc -3' miRNA: 3'- -CGuGGCGCGGGuGCUacaACUGGUGG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 40558 | 0.68 | 0.644956 |
Target: 5'- -gACgCGCGCCCgcGCGGUGUUGcugucggcggcucgcACCAgCa -3' miRNA: 3'- cgUG-GCGCGGG--UGCUACAAC---------------UGGUgG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 40470 | 0.66 | 0.765762 |
Target: 5'- cGUACUGCcgGgCCGCGcgGUUGACguuggaCACCc -3' miRNA: 3'- -CGUGGCG--CgGGUGCuaCAACUG------GUGG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 39877 | 0.72 | 0.40787 |
Target: 5'- -aGCUGCGCCCAcacCGAaucGUUGucGCCGCCg -3' miRNA: 3'- cgUGGCGCGGGU---GCUa--CAAC--UGGUGG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 38852 | 0.72 | 0.411493 |
Target: 5'- aGCGCguucucgauguucgaCGCGCCCgcaaugGCGGUGUUGACgACg -3' miRNA: 3'- -CGUG---------------GCGCGGG------UGCUACAACUGgUGg -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 38814 | 0.81 | 0.121548 |
Target: 5'- cGC-CCGCGCCCGCGAUGaccgagucgaUGGCCugCu -3' miRNA: 3'- -CGuGGCGCGGGUGCUACa---------ACUGGugG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 37730 | 0.72 | 0.435517 |
Target: 5'- gGCACCGcCGCCgACGAgcUGcucgaUGACCAgCg -3' miRNA: 3'- -CGUGGC-GCGGgUGCU--ACa----ACUGGUgG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 37652 | 0.66 | 0.785279 |
Target: 5'- cGCACCGcCGCCgC-CGccgGU--GCCGCCa -3' miRNA: 3'- -CGUGGC-GCGG-GuGCua-CAacUGGUGG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 37509 | 0.66 | 0.765762 |
Target: 5'- aGCACgaUGCuGCCCgACGAgaagaucGUcgGGCCGCCg -3' miRNA: 3'- -CGUG--GCG-CGGG-UGCUa------CAa-CUGGUGG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 37385 | 0.84 | 0.082608 |
Target: 5'- gGCACCGCccgccgcgccGCCCAUGGUGUUGuugacGCCGCCc -3' miRNA: 3'- -CGUGGCG----------CGGGUGCUACAAC-----UGGUGG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 37164 | 0.67 | 0.693909 |
Target: 5'- cCGCCGCGCCCGcCGAc----GCCGCg -3' miRNA: 3'- cGUGGCGCGGGU-GCUacaacUGGUGg -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 36995 | 0.68 | 0.683335 |
Target: 5'- cGCACCGUucuuGCCCGCGc----GcCCGCCg -3' miRNA: 3'- -CGUGGCG----CGGGUGCuacaaCuGGUGG- -5' |
|||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 36949 | 0.72 | 0.444971 |
Target: 5'- uCACCgggGUGCCCGCGA----GACCGCCu -3' miRNA: 3'- cGUGG---CGCGGGUGCUacaaCUGGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home